Xenopus tropicalis (tropical clawed frog): 780190
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Entry
780190 CDS
T01011
Symbol
nphp3
Name
(RefSeq) nephrocystin-3
KO
K19360
nephrocystin-3
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xtr03037
]
780190 (nphp3)
Cilium and associated proteins [BR:
xtr03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
780190 (nphp3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_NPHP3
TPR_12
NPHP3_hel
NPHP3
TPR_10
TPR_1
TPR_7
TPR_8
TPR_2
TPR_MalT
TPR_16
TPR_14
TPR_19
NPHP3_N
TPR_17
TPR_11
NACHT
AAA_22
TPR_3
KAP_NTPase
ARM_TT21_4th
Uso1_p115_C
DUF2225
AAA_14
14-3-3
AAA_16
AAA_19
TPR-S
T2SSE
XRCC4_CC
Motif
Other DBs
NCBI-GeneID:
780190
NCBI-ProteinID:
NP_001072733
Xenbase:
XB-GENE-487873
UniProt:
A0JM23
LinkDB
All DBs
Position
6:52864039..52896418
Genome browser
AA seq
1300 aa
AA seq
DB search
MGTASSLVNPGEVIEDTYGGGGGEACVIPVEVKPKARLLRSSFRRGPRVIGASFKSTASV
DLEYAAEYERLKKEYEIFRVSKNNEIASMQKKEVKLDEENKRLRAELQALQKTYQKILRE
KESAVEAKYQAMERAATFEHDRDKVKRQFKIFRETKEKEIQDLLRAKRDLEAKLQRLQAQ
GIQVFDPGESDSDDNGTELTVPGTQCEYWTSGGLGSEPSIGSMMQLQQSFRGPEFAHSSI
DVEGPFANVNRDDWDAAVASLLQVTPLFSQSLWSNTVRCYLMYTAETQAEVKIFLKEYSP
KLQRMCETSGYFFQVTFFPEECENQYFAVRKWEIEKSSIVILFICSSLPSCLQEDCEEAF
LKNTEAKPCLIYHRIEDGRSDSEGLKQLLEQDTNKANKTKIVDHYGDPVEGANKIYCQLE
QVINQDLLGIEITDPNAKDDSATKEEDDFWDVLWDVHDEQEQMEAFQQASHSICELGFQK
YYDRLNDLVAAPAPIPPLLISGGPGSGKSLLLSKWIQLQQKHSPNTLMLYHFVGRPLSSS
SEPSLMIKRLFLKLMQHSWSVSSLSLDPAKFLEEFPHWLEKLSIRYQGNIIIIIDSIDHI
QQSEKHMKWLIDPLPVNVRVIVSVNVETCPQAWRLWPTLHLDPLNSKDVKSLINMECGRA
NIILTKEQERKLERHCRSATTCNALYVTLIAKLLTWAGSTGNIDDVLQLCLQCQDTVSLY
RLALHSVQEVMPSAKDKEFMREILCFISASRNGVSECELMELCPGLTWPVLTSLIFHLYT
LVLLKYSCGLIQFQHLQAWDAVNLEYMQGDQSIISEYREKLIQHFNAQLSCDRVTWRSAD
ELTWLYQQQGEKQKLHRCLMNLFVSQNLYKRGHFAELLSYWQLVGKDKISMASEYFDALK
QYERSCEGEEKMTSLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQS
LHQLAGVYVQSKKFGNAEQLYKQALEISENAYGSEHMRVARELDALAVLYQKQNKFEQAE
QLRKKSLKIRQKSARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQN
NLETAETFLKRSLEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRR
ALSPDHPSLAYTVKHLAVLYKRKGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAV
LYCQMKKQAEASPLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEGDFEKAAELYKRA
MEIKETETSVLGAKAHSGHSSSGGDTYSVQNALPVCAFPE
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atggggacagcctcttctctggttaacccaggagaagtcattgaagatacatatggcggt
ggaggaggtgaagcttgtgtgattcctgtagaagtgaaacccaaagcacgtttactacgc
agttctttcaggcgtgggcctagagttattggagccagctttaagtccacagcctcagtg
gacttggaatatgctgctgaatatgaaaggctaaaaaaagaatatgagatattccgggtc
agcaagaacaatgagattgcctctatgcaaaaaaaggaggtcaaactggatgaggagaac
aagaggttaagagctgagttacaggcactgcaaaaaacctaccagaaaattctgcgagaa
aaagaaagtgcagtagaagctaaataccaggcaatggaaagggctgctacatttgaacat
gacagagacaaagtgaagaggcaatttaagatttttagggaaacaaaagaaaaagagatc
caggatttgttacgagctaaacgtgacctggaagccaaattacaacgactgcaagcccag
ggaatccaggtgtttgatccaggagagtctgattcagatgacaatggtacagaattaact
gttcctggcacacagtgtgaatactggacaagtggaggtctgggaagtgagccttctata
ggtagcatgatgcagcttcagcagtccttccgtggccctgagtttgctcatagttctatc
gatgttgaaggaccatttgccaatgtgaacagagatgactgggatgcagctgttgccagc
cttcttcaggttacacccctcttctctcagtctctgtggagtaacactgtgagatgctac
ttaatgtatactgcagaaactcaagctgaagtaaaaatcttcctgaaggaatattctcca
aagcttcagagaatgtgtgagacctcgggttatttctttcaagttacctttttccctgaa
gaatgtgaaaatcaatactttgctgtacgaaaatgggaaattgaaaaaagttccatagtc
attttatttatatgctcttccttgcccagctgtctgcaggaggactgtgaggaagcattc
ctgaagaacactgaagcaaaaccttgtttaatatatcacaggattgaagatggaaggtct
gactcagagggcttaaaacagctgctggaacaagacaccaacaaagccaataaaacaaag
attgttgatcattatggagacccagtggaaggagcaaataagatatactgtcagcttgag
caagttatcaatcaggatttattaggtatcgagattactgatcccaatgcaaaggatgac
tccgcaactaaggaagaagatgacttttgggatgtactatgggatgttcatgatgagcag
gaacagatggaggctttccagcaggcatctcattctatatgtgagctgggctttcagaaa
tattatgatcgattgaatgacttggtagctgcacccgcacctattcccccactgcttatt
tctggaggacctggatcaggcaaatcattactgctatcaaaatggattcagcttcagcag
aaacattctccaaacactttgatgttgtatcattttgttggaagaccattgtcaagcagc
tcagaaccatcactgatgataaaaaggctatttcttaagctaatgcaacactcctggtca
gtatcatcattatctctggaccctgctaagttccttgaagagtttcctcattggcttgaa
aagctatctatccgctaccaaggaaacattatcattattattgactccattgatcacata
cagcaatctgagaaacatatgaagtggttgattgatcctttaccagtgaatgttcgagtc
attgtttctgtgaatgttgaaacctgccctcaggcatggaggctgtggccaactcttcac
cttgatccactgaattcaaaagatgttaaatcccttataaatatggagtgtggtagagca
aatatcatactaaccaaagagcaggagagaaaactggagagacactgtcggtcagcaaca
acatgcaatgctttatatgtaacactaatagcgaaactacttacctgggctgggagcact
ggcaatattgatgatgttttacagctgtgcctgcagtgtcaggataccgtttctctatac
agactggcattgcactctgtgcaagaggttatgccaagtgcaaaagacaaggagtttatg
agggagattctatgctttatcagcgccagccgtaatggggttagcgaatgtgaactgatg
gaactctgcccaggtctcacatggccagtcttaacatctttgatatttcatctgtataca
ctggttcttctgaagtacagctgtgggttgattcagtttcagcacctacaggcatgggat
gctgtgaatctggaatatatgcaaggggatcagagtattatttcagagtacagagagaaa
ctaatacagcatttcaatgcacaattaagctgtgacagggtaacatggagaagcgctgat
gagctcacttggctttatcaacaacaaggagaaaagcagaaattgcacagatgcctcatg
aacctctttgtctctcagaacctttacaaaagagggcattttgcagaattgcttagctac
tggcagcttgtgggtaaagataaaatctcaatggcgtctgaatactttgatgcgttaaag
cagtatgaaagaagctgtgaaggagaagagaagatgaccagcctggcagatctttatgaa
acattggggcgatttcttaaagacttgggcctcctaagccaggcagtgactcctcttcag
aggtcattagagatcagagagactgctttggatccagaccaccctagtgttgcccagtct
ctgcaccagctggctggagtttatgtgcaatctaagaaatttggaaatgcagagcaactc
tacaaacaagcactagaaataagtgaaaatgcttatggcagtgaacacatgagagtagca
agggagcttgatgcactggctgtgctgtatcagaaacaaaacaaatttgaacaagcagag
cagctgcggaaaaaatcactgaaaattcgacaaaagtctgcaagaaggaaaggcagcatg
tatgggtttgctctgttacggcgccgtgctctacagctagaggaattaacactgggcaaa
gacacctctgataatgctcggaccctgaatgaacttggagtgctttattatttgcagaat
aatcttgaaacagctgaaacatttcttaagcgttcactggaaatgagagagcgggtgctt
ggtgctgatcaccctgactgtgcgcagtcaataaataacctagctgcattatacaacgaa
aagaagcagtatgacaaggctgaagagctctacgagagggctttagatattcgcaggaga
gcactgtctcctgatcacccttccctggcatatacagttaaacacctagctgttctctat
aaaaggaaaggtaagcttgataaagctgtgcctctctatgagctggctgtggagattcgc
cagaagtcttttggccccaaacatccaagtgttgctactgctctggtgaaccttgcagta
ctgtactgtcagatgaagaaacaagctgaagcctcgccactgtatgagagagcaatgaag
atttatgaagatagtttgggtcgaatgcatccaagagttggagagacattaaaaaattta
gctgtgctaagatacgaagagggcgactttgaaaaggcagcagagttatataaacgagca
atggaaatcaaggaaactgaaacatcagtcttgggagcaaaagctcactcaggacattct
tcaagcgggggagacacctatagtgtccagaatgcattaccagtctgtgcattccctgag
tag
DBGET
integrated database retrieval system
