Xanthomonas tesorieronis: AB3X08_00185
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Entry
AB3X08_00185 CDS
T10866
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xts Xanthomonas tesorieronis
Pathway
xts03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AB3X08_00185 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xts03400
]
AB3X08_00185 (ligD)
Enzymes [BR:
xts01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AB3X08_00185 (ligD)
DNA repair and recombination proteins [BR:
xts03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AB3X08_00185 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
XEA99892
LinkDB
All DBs
Position
37515..40427
Genome browser
AA seq
970 aa
AA seq
DB search
MTLREYARKRRFGATPEPADDGAAAPSQRPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRVGEKRLAVQVEDHPLSYAGFAGDIPEGHYGAGHVDVFDHGTWSCDGEPLAAIAA
GKLDFVLHGERLNGNWKLVRTALRGKQPQWLLIKRDDAFAADRDADALLAEPVPAPAPKR
VAKTAKPTKASKVGKASRPAREAAPATSARAVAPSAARPRRSDAAWRKRALALDGARDRP
CPPGERAQLTLLRDRAPDGAQWLHEIKWDGYRLLADLDAGRATLRSRNDQAWTGTFPEVA
HAVQALPVSEARLDGELVVLDADGRSDFSALQRVIEGSSKQPLRYLVFDLLGVAGVDLRE
VPLLQRKHLLRQLLGDTPGVLAYSDHVLGRGPEVFAAAAAKGYEGVVSKRADARYHGGRG
GDWVKTKHENSDDFVIVGYTDPKGARSGFGSLLLAQRSDGGLRYVGRVGTGFDASGLRRL
LAQLQALHSEQEVVDIPAHAPFPRRSVHWVRPQLVAEVAFRGWAKEGLLRQAAFKRLRED
KPLQDLGGDRAPPPAAAQGSRAVAARTAASAKKTAPAARGSAKPTKRSATSKDDAAKSGA
AKRKPASAKPAPRASAATQNAASSAKKAAPAARESAKPTKRSTTSKDDAAKSDAAKRKPT
SAMPAPRASAAAQKAASSASNDAAAAAVVITHPERVVYPSAGISKGEVADYYRAIAPWVL
QEVAGRPLSLLRCPDGAGGECFFQKHNNRALGQHVHAIALKQKSGTEDYLYIDDLAGLLE
LVQMNTLELHPWGSTVDDPEHPDRLVFDLDPGEGVSWTQIKAAAREIRTRLRETGLESFV
RLSGGKGLHVVVPIVPGADWEQARDFCEAFAQALASSAPERYVATMSKAKRNGVIFIDWL
RNGRGNTSVCSWSLRAREHATVAVPLRWEELARIASPQVFPLAKALQRAARLREHPWKEM
DALRQRLPGT
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgcgcgagtacgcccgcaaacgccgcttcggcgcgaccccggaaccggccgac
gacggcgccgcggcgccgtcgcagcggccgatcttcgtcgtgcagctgcaccacgccagc
tcgcgccactacgatttccgcctggaagccgacggcgtgctgaagagctgggcggtgccg
aagggcccgtcgctgcgcgtcggcgaaaagcgcctggcggtgcaggtggaggatcatccg
ctgtcctacgccggcttcgccggcgatattcccgaaggccattacggcgccggccatgtc
gatgtattcgaccacggcacctggtcgtgcgacggcgagccgctggccgcgatcgccgcc
ggcaagctggatttcgtgttgcacggcgagcgcctcaacggcaactggaaactggtgcgc
accgcgttgcgcggcaagcagccgcagtggctgctgatcaagcgcgacgacgcgttcgct
gccgatcgcgatgccgatgccctgctggcggagccggtccccgcgcctgcgccgaagcgc
gtggccaagaccgccaagccaacgaaggccagcaaggtcggcaaggcttccaggccggca
cgcgaggcagccccagcaacgtctgcccgcgctgtcgccccgtcggccgcgcggccgcgg
cgcagcgatgcggcctggcgcaagcgcgcgctggcattggacggtgcgcgcgatcgcccg
tgtccgccaggcgagcgtgcacagctgaccctgctgcgcgatcgcgcccccgatggcgcg
caatggctgcacgagatcaagtgggacggctaccgcctgctcgccgatctcgacgccggc
cgggcgacgctgcgctcgcgcaacgaccaggcctggaccggcacctttcccgaggtcgcg
cacgcggtgcaggccttgccggtgagcgaggcgcggctggacggcgagctggtggtactc
gatgccgatggccgcagcgatttctccgccttgcaacgggtcatcgagggcagctccaag
cagccgctgcgctacttggtattcgatctgctcggcgtggccggcgtggacctgcgcgag
gttccgctgctgcagcgcaagcacttgttgcggcagctgctcggcgacacgccgggtgta
ctggcctacagcgaccacgtgctcggccgtggcccggaggtgttcgccgcggcggcggcg
aagggctacgagggcgtggtcagcaagcgagcggacgcgcgctatcacggcggccgcggc
ggcgattgggtcaagaccaagcacgagaacagcgacgatttcgtcatcgtcggctatacc
gatcccaagggcgcgcgcagcggcttcggctcgctgctgctggcgcagcgcagcgatggc
gggctgcgctatgtcggccgcgtcggcaccggcttcgacgcatccggcctgcggcgcctg
cttgcgcagctgcaggcgttgcacagcgagcaggaggtggtggacattcccgcgcatgcg
ccattcccgcggcgcagcgtgcattgggtgcggccgcagttggtggcagaagtcgccttc
cgcggctgggccaaggaaggtttgttgcgccaggccgcgttcaagcgcctgcgcgaggac
aagccgctgcaggatctgggcggcgatcgtgcgccaccgccggcggcagcccagggcagc
cgtgccgtggcggcgcgcacggcggcatcggcgaagaagaccgcgccggccgcgcgtgga
tcggccaagccgacgaaacgcagcgccacttcgaaagacgatgctgcgaaaagcggcgcc
gccaagcgcaaaccggcgagcgccaagccggcgccacgcgcaagcgctgcaacgcagaac
gcagcttcctcggcgaagaaggccgcgcctgccgcgcgtgaatcggccaagccgacgaaa
cgcagcaccacttcgaaagacgatgctgcgaaaagcgacgccgccaagcgcaaaccgacg
agcgccatgccggcgccacgcgcaagcgctgcggcgcagaaggccgcttcctccgccagc
aacgacgccgcggctgccgcggtcgtcatcacccatccagagcgcgtggtgtatccgtcc
gccggcatcagcaagggcgaggtcgccgactactaccgcgccattgcgccgtgggtactg
caggaagtcgccgggcgtccgctgtcgttgctgcgctgccccgatggcgccggtggcgaa
tgcttcttccagaagcacaacaaccgcgcgctgggccagcacgtgcatgcgatcgcgctg
aagcagaagagcggcaccgaggactacctgtacatcgacgatctggccggcctgctggaa
ttggtgcagatgaacaccctggagctgcatccctggggttcgaccgtggacgatcccgag
cacccggaccggctggtattcgacctggacccgggcgagggcgtgagctggacgcagatc
aaggccgccgcgcgcgagatccgtacgcgcctgcgcgagaccgggctggagagcttcgtg
cgcctgtccggcggcaagggcctgcacgtggtggtgccgatcgtgcccggcgcggactgg
gagcaggcgcgcgatttctgcgaagccttcgcccaggcgctggcgtcctccgcgcccgag
cgctatgtggccacgatgagcaaggccaagcgcaacggggtgatcttcatcgattggctg
cgcaacggccgcggcaacaccagcgtctgctcgtggtcgctgcgcgcgcgtgagcacgcc
accgtggcggtgccgctgcgctgggaggaactggcgcggatcgcctcgccgcaggtattc
ccgctggccaaggcactgcaacgcgccgcgcgcctgcgcgagcatccatggaaggagatg
gacgcgctgcggcagcgtttgccggggacgtga
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