Xanthomonas tesorieronis: AB3X08_01680
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Entry
AB3X08_01680 CDS
T10866
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xts Xanthomonas tesorieronis
Brite
KEGG Orthology (KO) [BR:
xts00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xts03016
]
AB3X08_01680
Enzymes [BR:
xts01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AB3X08_01680
Transfer RNA biogenesis [BR:
xts03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AB3X08_01680
Prokaryotic type
tRNA splicing ligases
AB3X08_01680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
Motif
Other DBs
NCBI-ProteinID:
XEB00163
LinkDB
All DBs
Position
complement(377498..378718)
Genome browser
AA seq
406 aa
AA seq
DB search
MTMQNYELLHAEGSATPIKGWVRGVPLEAQAHEQLRNIAAIPFVGPWVAVMPDVHLGKGA
TVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAADLPDSLAQLRSSIERSVPVGNGRGG
EHRKLPDSIATRIAQSGLVERLDTIKARHRRIRTDKLDCQIGTLGGGNHFIEVCLDESDA
VWVMLHSGSRGTGNLIGSYFIEQAREQLAHRVLGFHLPDKDLAFFMQGEPLFDDYVEAVS
WAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKEMHAGEELLVTRKGAV
SARAGELGIIPGSMGAKSFIVRGLGNGDSFHSCSHGAGRVMSRTAARQQITLAQHREATA
HVECRKDAAVIDESPAAYKSIDAVMAAQSDLVEVVHTLRQVLCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgactatgcagaactacgaattgctgcacgccgagggcagcgccacgccgatcaagggc
tgggtgcgcggcgtgccgctggaagcgcaggcccacgagcagctgcgcaacatcgccgcg
atcccgttcgtggggccgtgggtggcggtgatgccggacgtgcacctgggcaagggcgcg
accgtgggctcggtgatcccgacccgcggcgcgatcatcccggcggcggtcggcgtggac
atcggctgcggcatggccgcggtgcggaccacgctgcgcgcggccgatttgcccgacagc
ctggcgcaactgcgctccagcatcgagcgcagcgtgccggtcggcaacggccgcggcggc
gagcatcgcaagctgcccgacagcatcgccacgcgcatcgcgcagtcggggctggtcgag
cgcctggacacgatcaaggccaggcaccgccggatccgcaccgacaagctggattgccag
atcggcacgctcggcggcggcaaccacttcatcgaagtgtgcctggacgagagcgacgca
gtgtgggtgatgctgcacagcggctcgcgcggcaccggcaacctgatcggcagctatttc
atcgaacaggcgcgcgagcaactggcgcaccgcgtgctcggcttccacctgccggacaag
gacctggcgttcttcatgcagggcgagccgttgttcgacgactacgtggaagcggtgtcc
tgggcgcaggactacgcgcgcgagaaccgcgaggcgatgatggcgcgggtgctggcggag
atgcgccaccgcctgccgaagttccagctggaaaagctggcggtgaactgccaccacaac
tacgtgcagaaggaaatgcacgccggcgaggaactgctggtgacccgcaagggtgcggtc
agcgcgcgtgcgggcgagctgggcatcattcccggcagcatgggcgcgaagagcttcatc
gtgcgcggcctgggcaatggcgacagcttccacagctgcagccacggcgccgggcgggtg
atgagccggaccgccgcgcgccagcagatcaccctggcccagcaccgcgaggccaccgcg
cacgtggagtgccgcaaggatgcggcggtgatcgacgaatcgccggcagcgtacaagtcg
atcgatgcggtgatggccgcgcagagcgacctggtggaagtggtgcacaccttgcgtcag
gtgttgtgcgtgaagggctga
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