Xylella taiwanensis: AB672_00305
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Entry
AB672_00305 CDS
T05568
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
xtw
Xylella taiwanensis
Pathway
xtw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xtw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AB672_00305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xtw03400
]
AB672_00305
Enzymes [BR:
xtw01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AB672_00305
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AB672_00305
DNA repair and recombination proteins [BR:
xtw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AB672_00305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AXI82526
UniProt:
Z9JG65
LinkDB
All DBs
Position
82757..83572
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETTLRGLLPYLTDQLINCLILRRRTLRWDIPSQIEGRLPGHRITALRRRAKYL
LIDTNAGGSLIIHLGMSGSLRLLAAETPLRPHDHVDIVLTNGRVLRFNDPRRFGCLLWQE
DGQVHPLIQRLGCEPLSDVFNGYYLYQCSRGRHVSVKAFLMDQRIVVGVGNIYATESLFR
AGISPLCEAGKISAQRYQRLAEVVKDILLYAINRGGTTLRDFLDPDGHPGYFKQELFVYG
RQQQPCKHCGSLLRQTTIRQRTTVWCGNCQS
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcttcccgaagtcgaaaccacattgcgtgggctgttgccatatctgactgat
cagctcatcaattgtcttatcctgcgtaggcgcaccttgcgttgggatatcccttcccag
attgaaggtcgtctgccgggtcatcgcatcactgctttgcgtcgtcgggccaaatacctg
ctgatcgatactaatgcagggggtagcctcatcatccatctcggtatgtccggcagtctg
cgtctgctagcggcagaaacgccgctacgcccacacgatcatgtggacatcgttttaact
aacggtcgtgtgctacgtttcaacgatccccgccgcttcggatgtttactatggcaagaa
gatggacaagtgcatcctctcatccagcgccttggctgcgaaccactctcagatgttttc
aatggctattatctttaccagtgtagccgtggtcgccatgtgtccgtcaaagctttcctc
atggaccaacgtatcgtggtcggtgtcggcaatatatatgccactgaaagcttgttccgc
gccggtatcagccccctatgcgaagccggcaaaatatctgcccaacgttatcagcgcttg
gctgaagtggttaaggatattcttctctatgcaatcaaccgtggaggaactaccctgcga
gatttcctcgatcccgatgggcaccctggctacttcaagcaggaattgtttgtctacggt
cgtcagcaacagccctgtaagcattgtggaagccttttgcgccaaacaactatcagacag
cgtactaccgtctggtgtggcaattgccaatcttga
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