Xylella taiwanensis: AB672_01155
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Entry
AB672_01155 CDS
T05568
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xtw
Xylella taiwanensis
Pathway
xtw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB672_01155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtw03019
]
AB672_01155
03009 Ribosome biogenesis [BR:
xtw03009
]
AB672_01155
Enzymes [BR:
xtw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB672_01155
Messenger RNA biogenesis [BR:
xtw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB672_01155
Ribosome biogenesis [BR:
xtw03009
]
Prokaryotic type
rRNA helicases
AB672_01155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_19
Flavi_DEAD
Cas3-like_C_2
P-loop_SecA
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AXI82675
UniProt:
Z9JJZ5
LinkDB
All DBs
Position
complement(306491..308314)
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AA seq
607 aa
AA seq
DB search
MSNPSPTPLLFADLGLSDAVMQAVTKVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPLLTRTALTQTKPQVLVLAPTRELAIQVAEAFQRYAAAISGFRVLPVYGGQSYGQ
QLAALKRGVHVVVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEAVLQKL
PVSRQVALFSATMPPQIRRIAQTYLHDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALT
RILEVETFDAMIIFVRTKAATEELAEKLQARGLAAAAINGDMQQMQRERTIHQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGML
RQIERATHQPIEAMQLPSVDAVNDTRVAKFFGRISNALVAGDEIDFYRKLLQRFESEHNV
PAIEIAAALARLLQGDSPFLLSAPARPPRERNESSEHGKRSSSFKRPERPNHTEHAKRPQ
RTAASRNTPEFGMESYRIEVGRIHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSILDL
PAEMPREILQHLKKVWVSGQQLQMRRIDATETIAPVREFKPKPVGAGKFTPRPQHNKSAK
PRPPYGG
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacccatcccctacgccgctgctgtttgcagatctcggtctctctgacgctgtc
atgcaagccgtgaccaaagtcggttatgaaactccgtcgcccatccaggcggcaaccatc
ccggcattgctggctggacgcgacgtgctcggccaagcgcagaccggtaccggcaagacc
gccgcattcgcgctcccgttactgacacgcaccgcgctgactcagaccaagccgcaagtg
ctcgtgctggcacctacccgcgagctggccatccaagtcgccgaggcattccagcgctat
gccgcagcgatctctggcttccgcgtgctaccggtgtacggcggccaatcctatggccag
caactggccgcactgaaacgcggtgtgcatgtggtcgtcggcactcctggccgggtgatc
gatcacctggagcgcggcaccctggatctgtccgaactgaaaacgctggtgctcgacgaa
gccgatgaaatgctgcgtatgggtttcatcgaagacgttgaagccgtgctacagaagttg
cccgtgtcacgtcaggtagcgctgttttcggccaccatgccgccacagatccgccgcatc
gcgcaaacctatctacacgacccgatcgaagtcactatcgccactaaaaccacgaccgcg
gccaatatccggcaacgttactggtgggtgagcggcctgcacaagctagacgcgctcaca
cgcattcttgaggtggagacgttcgacgcgatgatcatcttcgtgcgcactaaagccgcc
accgaagaattagccgagaaattgcaagcacgtggcttggccgccgcagcgatcaacggc
gacatgcaacagatgcaacgcgagcgcaccattcaccaactcaaggatggcaagctcgat
atcctcgttgccaccgacgtagccgcacgcggtttggacgtggaacgtatcagccacgtg
ctgaactacgacattccttacgacgttgagagttacgtccatcgcatcggacgcactggc
cgtgccggccgcagcggcgaagcgattctcttcgtgacgccacgcgaaaaaggcatgctg
cgccagatcgaacgtgccactcatcaaccgattgaagccatgcaactgcccagcgtggat
gcagtcaacgacacccgcgtggccaaatttttcgggcgcatcagcaatgctctggtagcc
ggcgatgaaatcgacttctaccgcaagctgctgcaacgtttcgaaagtgaacacaatgta
ccggctatcgagatcgcggccgccctggcgcgactgcttcagggggatagcccgttcctg
ttgagtgcgccggcacgccccccacgcgagcgcaacgagtcatccgagcatggcaaacgc
tcctcatcgttcaagcgtccagagcgccccaaccacactgaacacgccaagcgtccccag
cgcaccgcagcatcacgcaacaccccggagttcggtatggagtcttaccggatcgaagtc
ggccgcatacacggcgtgaagccagccaatatcgtcggcgccattgccaacgaagctgga
ttggagagccgctacattggccggatcgacatccgtgacgaccattcgattctggatctc
cccgcagagatgccacgcgagatcctgcagcacctcaagaaggtctgggtctccggacag
caactccaaatgcgtcggatcgacgcaaccgaaacaatcgcgcctgtccgagaattcaag
cccaaaccagttggcgctggtaaattcacgcccaggccacaacacaacaaatcagccaaa
ccaagaccaccatacggcggttga
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