Xylella taiwanensis: AB672_08540
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Entry
AB672_08540 CDS
T05568
Name
(GenBank) DEAD/DEAH box helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xtw
Xylella taiwanensis
Brite
KEGG Orthology (KO) [BR:
xtw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtw03019
]
AB672_08540
Enzymes [BR:
xtw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB672_08540
Messenger RNA biogenesis [BR:
xtw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AB672_08540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
ABC_tran
AAA_30
T2SSE
nSTAND_NTPase5
AAA_25
NACHT
SRP54
FtsK_SpoIIIE
PhoH
Motif
Other DBs
NCBI-ProteinID:
AXI83977
UniProt:
Z9JHF8
LinkDB
All DBs
Position
complement(1987589..1992013)
Genome browser
AA seq
1474 aa
AA seq
DB search
MSVIEQNIWGQLRKHRRAIDDAMSRDRGRLLGLWSHWQRQPRDHEARANFQRVLSASRAQ
RQVRANSQPVVTVDPRLPIAHEAEHIVALIRAHQVVVIAGETGSGKTTQLPKLCLSAGRG
IAGTIGCTQPRRIAARAVAMRVAEELQTPLGMVVGFQVRFTDKVSDASRIKFMTDGILLA
EIASDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLKKRSDLKLIVTSATIDTARFSKH
FDAAPVINVEGRTYPVEVRYRPLAEVGCAGDRLEEAHGGTEYPSMHGGARRSGGEVAVPK
RAVATPQEEQRTVNDAIVAVIDEITREDPHGDVLVFLPGEREIRDLCRALERRKYRETEV
LPLYARLSAGDQDRVFNPGSGRRLVLTTNVAETSLTVPRIRYVVDPGYARVKRYSARQKL
DRLYIEPISQASANQRAGRCGRIADGVCYRLYTEADFLARPAFTDPEIRRSSLAGVILRM
LQLDLGRIAEHVSSLSERVSGSEQQRTSQIIENFSFLEPPDERAVADGWQQLVELGAVDS
QQALTAIGRKMARLPVDVKLARMLVAAQQHGCVYEMTVIVAFLGIQDPRERPPEAREAAD
NAHAKFADARSDFVGILRLWQAYWQVREYSTQSKLREWCQRHFLSVLHMREWCELQRQLC
LLCEGEQEDDLRNVRSSEALLKKGARLSPRSKSESGLGALGLVPQADALLSSATLLRALL
AGQGTSSESERRGHKPSRGELHRAARLARERSAVRNVTRTVHGANADMHTPSAVTPGIST
PGELLNDAPPISERARAAAYQALHRALLAGLPIHIGHRTEKGDFQAPRQRRFLLFPGSVL
AKQPPPWVLTATLLDTQKVWGLTNAAIEPDWVIAELPHLLLRKHFNPHWSRAQGRVLVSE
QISLFGLVLAPKKPVHYGRIDPIAAHDLFVRQALVTGEINTRAGFVADNLKVLEQAHQEE
AKLRRAGIVADEDWQARWYLDRVPHDIDSTDALDAWWKDLPVNKRHGLYWSLIDLLPGEG
SEEDRYPKYFALGDARLPLHYSFDPGAVDDGVTLEVPLHLLNALDPVRLSWLVPGFVADK
ASALIRSLPKALRRSYVPAPDFGRAFSQAFPQPAADDLRGELARFLSRITGVRAAAIDFD
EQLLEPYLHMRLRLRDESGHVLAESRDLDALRARFGTHSGQAFVARSGRTFIMEGLREFP
AMSIPVQLTGEAGVPMYPALVDEGEMVALRVFADSSEAAQVHPHGVRRLLEIALANKIKQ
VRKQLPVSSKSGLLYAAIESKECLRDDLVEAALNAVLANALESIRDPVVFAQCRDTAAQQ
LFPEMMVRLNLAEAILVAVAELKPLLEAPLMGWARGNLDDMERQLAQLVYPGFLRQTPAE
VLTHYPRYLKAMLLRSERAKRDPSRDQARMLELKPFVDALEVAMAQGVSGQPEWQALRWD
LEELRVSLFAQELGARTGISAKKLAQRLAALRGG
NT seq
4425 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttatcgaacagaacatctggggccaattgcgtaagcatcgtcgcgcgatcgac
gatgcgatgagccgcgaccgtgggcgattactggggctatggtcgcattggcagcgtcag
cctcgtgatcatgaggcgcgtgctaacttccagcgggtgttatccgcatcacgggcacag
cgtcaggtgcgtgcgaatagtcaaccagtggtcacagtggaccctcgattgcctatcgca
cacgaagcagagcacatcgttgcgctgatccgggcgcatcaggtggtggtcattgctggt
gaaaccggttcgggaaagaccacgcaattgccgaagttgtgcttgtctgccgggcgtggc
attgccggtacgatcgggtgtacgcagccacgtcgtatcgcggcgcgtgcggtggcgatg
cgggtcgctgaggaactacagacacccttggggatggtggtgggcttccaggtgcgtttc
accgataaagtgagtgatgcctcacggatcaagttcatgaccgacggtattttgctggcg
gagattgccagtgaccgctggttgtcggcgtatgacacgatcattgtcgatgaagcacat
gagcgcagcctcaatattgattttttgctgggttatctcaaacagttactgaaaaaacgt
agtgatttgaagctgatcgtgacgtcagcgacgatcgacacagcacgcttttctaagcat
ttcgacgctgcgccggtgatcaatgtggagggccgtacttacccggtggaggtgcgttac
cgtccgttggctgaggtgggatgtgctggtgatcgccttgaagaggctcacggtggtact
gagtatccgtcgatgcatggtggtgcgcgaagatctggaggtgaagttgctgtgcccaag
agggcagtggcgacgcctcaagaggagcagcgcaccgtgaacgatgcgattgtggcggtg
atcgacgagatcacccgtgaggacccgcacggtgatgtgctggtgttcctaccgggtgag
cgcgagattcgcgatctttgccgtgcgctggagcggcgcaagtatcgcgagactgaagtg
ctgccgctgtacgcgcgcttgtcggctggtgatcaggatcgggtgtttaaccctggatcc
gggcgtcggctggtactgacgaccaacgttgctgagacgtcattgacggtgccgcggatc
cgctatgtggtcgatccggggtatgcgcgtgtgaagcgttacagtgcgcggcagaagttg
gatcgcctctacattgagccgatcagtcaggcgagtgccaaccagcgtgccggccgttgc
ggccgcattgccgatggtgtctgttaccggctctacactgaggcagacttcctcgcacgg
ccagcattcactgatcctgagatcagacgctcgtccttggctggggtgattctgcgcatg
ttgcaattggacctgggtcggatcgcggagcacgtctcttccttgagtgaacgtgtatct
gggtcggagcagcagcgcacctcccagatcattgaaaatttctcgtttctcgagccccct
gacgaacgggcagtcgccgatggttggcaacaattggttgaattgggtgcggtagatagc
cagcaagcgctgacagccattgggcgcaagatggcacggttgccggtggacgtgaagctg
gcgcgcatgctggttgctgcgcaacagcacggttgtgtgtacgagatgacggtgattgtt
gccttcctggggatccaggatccgcgtgagcgccccccggaggcgcgtgaggcggctgac
aatgcgcatgcgaagtttgctgatgcacgttcggatttcgtcggcatcttgcgtctatgg
caggcttactggcaggtccgcgagtactcgacccagtccaagttgcgtgagtggtgccag
cgccattttcttagtgtgctgcacatgcgtgagtggtgcgagttgcagcggcaattgtgt
ctattgtgcgagggggagcaggaggacgatctgcgcaacgtacgatcgtcggaagcgctt
ctgaagaagggagcaaggctgtctcctcgctcaaagtcagaatctgggttgggagcgctg
ggcttagtgcctcaggcggacgcgttactgtcgagtgcgacattgttgcgggctctttta
gcggggcaggggacgtccagcgagagcgagcgtcgtggtcataagccgagtcgtggagag
ctgcatcgtgccgcgcgcttggcgcgcgagcgtagcgcagtgcgcaacgtcactcgtaca
gttcacggcgcgaatgccgatatgcatacaccgtctgcggtgacgcctgggatcagcaca
ccgggtgagttactcaatgatgcaccgcctatcagcgagcgtgcgcgtgcggctgcctat
caagcgttgcatcgtgcgttgctggccggtttgccgatccacattggccatcgtaccgag
aagggcgatttccaggcgccccgccagcgccgctttctgttgtttcctggttcggtgttg
gcgaagcagccgccaccgtgggtgctgaccgcgactctgctggacacacagaaggtctgg
ggcttgacgaatgctgccatcgagccggattgggtgattgctgagttgccgcatctgttg
ctgcgcaagcatttcaatccacattggtcacgtgcccagggccgagtgctggtctctgag
caaatcagtttgtttgggttggtgttggcgccgaagaagccggtgcactatggccgtatc
gatccgatagcggcgcacgatctctttgtgcgccaagcattggtgaccggcgagatcaac
acgcgtgctggttttgttgccgacaatctcaaggtgttggagcaggcgcaccaggaggag
gcgaagctgcgtcgtgccggtattgtggccgacgaggattggcaggcacgctggtatctc
gatcgggtgccgcatgacattgattcgacagatgcactggatgcatggtggaaagatctg
ccagtgaacaagcggcatggcctgtattggtcattgatcgacttgctgcctggtgaaggc
agtgaggaagatcgctacccgaaatattttgcactcggcgatgcgaggttgccgttgcac
tattcgtttgatccaggtgcagtggatgatggcgtcaccttggaggtgcctttgcatctg
ctcaacgcgctggatccagtacggctgtcgtggctggtgcctggctttgtcgccgataaa
gcatctgcgctgatccgttcgttgccgaaggcactacgtcgcagctatgtaccggcacct
gattttgggcgtgcgttttctcaagcctttccacagcctgcggcggatgatctacgcggc
gagttggcgcgctttttgtctcgtattaccggtgtgcgggcggcggcgatcgacttcgat
gaacagttattggagccgtatttgcatatgcgtctgcgtctgcgtgatgagagcggtcat
gtcttggccgagtcgcgggatcttgatgcgttgcgtgctcgttttggcacacactccggg
caagcgttcgtggcccgttccggacgcacattcatcatggaggggctgcgtgagtttcct
gctatgtcgattccggtccagctcaccggtgaggctggggttccgatgtacccggcgttg
gtggacgagggtgagatggtggcgttgcgggtcttcgctgattctagtgaggccgcacag
gtacatccgcatggcgtacggcggctattggagatcgcgttggccaacaagatcaaacag
gtgcgtaagcagttgccggtgtcctcgaagagtggactgttatatgcggccattgagtca
aaggaatgcttgcgtgacgacctggttgaggcggcgttgaatgcggtattagcgaatgcg
ttggagtcgatccgtgatcctgtcgtgtttgcgcagtgccgcgatacggcggcgcagcag
ctgttccctgagatgatggtgcggctgaatctggccgaggcgatcctggtcgccgtggcc
gagcttaagccactgctggaagcgccgttgatggggtgggcgcgtggcaatctggatgac
atggaacggcagttggcccagttggtgtatccgggtttcttgcgccagacacccgccgag
gtactgacgcactacccgcgctatctgaaagcgatgctgctgcggagtgagcgcgccaag
cgcgatccgtcgcgcgatcaagcccgaatgcttgaactcaagccattcgtggatgcgttg
gaggtggcgatggcacagggtgtctccgggcaaccggagtggcaggcgttgcgttgggat
ttggaggagttgcgggtgtcactctttgcgcaggaattgggcgcacgcaccgggatttcg
gctaagaaattagcgcagcggttggctgcgctgaggggcggctaa
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