Xylella taiwanensis: AB672_08550
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Entry
AB672_08550 CDS
T05568
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
xtw
Xylella taiwanensis
Pathway
xtw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB672_08550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtw03019
]
AB672_08550
03400 DNA repair and recombination proteins [BR:
xtw03400
]
AB672_08550
Enzymes [BR:
xtw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB672_08550
Messenger RNA biogenesis [BR:
xtw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB672_08550
DNA repair and recombination proteins [BR:
xtw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AB672_08550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AXI83979
UniProt:
Z9JJA0
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All DBs
Position
1992844..1994640
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AA seq
598 aa
AA seq
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MSSATHAVLQRVFGYDTFRGPQQAIIEHVAAGYDALVLMPTGGGKSLCYQVPSLLRNGIG
LVISPLIALMQDQVETLRQLGIRAEYLNSTLDATEAKRIEHALLTGELDLLYIAPERLLT
GHFLSLLERSHIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPHVPRIALTATAAPPT
QREIAERLDLSHAHHFISSFDRPNIRYTVVQKNNMRRQLQEFLDRHRNAAGIVYTMSRRK
AEEIAAYLRTQGYNALPYHAGLPAEMRAKHQRCFLHEDGIVMCATIAFGMGINKPDVRFV
AHIDLPKSMEGYYQETGRAGRDGEAAEAWMCYGLGDVVLLKQMIEQGEASEARKCVERAK
LDHLLGYCESMQCRRQMLLASFGETYPQPCGNCDNCLTPDIAWDASVLSQKALSCVYRTG
QRFGAGHLIDILRGSKSEKVLQLGHDQLSTYGIGRNVNERSWRSVFRQLIAASLLEVDNE
GHGGLRLTETSRAVLKGERQVMMRRDQAIRERDRAGQRSGLSVLPEDLALFNALHGLRAQ
LAKEQNVPAFVIFHDSTLRHIAEQRPTSLNALAQVSGIGSSKLARYGHQLIELVLAQG
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgccactcatgcagttctacagcgcgtcttcggctacgacaccttccgcggc
cctcagcaggccatcatcgaacacgtcgctgccggctacgacgccttggtactgatgccc
actgggggcggcaagtcactgtgctaccaagtgccttcgctgctgcgcaacggcatcggc
ttggtcatctcaccactgattgcactgatgcaagaccaagtcgagaccctgcgtcagctt
ggcatacgcgccgaatatctcaactcgaccctggatgccacggaagccaagcggatcgag
cacgccctgctcaccggggagctggacctgctgtatatcgctccggaacggttactcact
ggacattttttatcgctgctagaacgtagccacatcgccctgttcgcaatcgacgaggcc
cattgcgtctcacagtggggccacgatttccgtcccgaataccgtcaactcaccgtgctt
cacgagcgctggccacacgtaccgcggattgcactgacggccaccgccgccccacccacc
caacgcgagattgctgaacgcctcgacctgagtcacgcgcatcacttcatcagttcattc
gaccgccccaacatccgctacacggtcgtgcagaaaaacaatatgcgccgccaactgcag
gaattcctggaccgccatcgcaacgcagccggcattgtctacaccatgtcacgacgcaag
gccgaagagatcgccgcatacctgcgtacccaaggctacaacgcgctgccttatcatgcc
ggcttgccagccgaaatgcgtgccaagcaccaacgctgctttctgcatgaagacggtatt
gtgatgtgtgccaccattgccttcggcatgggcatcaacaaacctgatgtacgctttgtc
gctcacatcgaccttcccaagtcaatggagggttactaccaagaaaccggccgtgccggc
cgcgatggcgaagccgcagaagcatggatgtgctacggcctgggagacgtcgtactgctc
aaacaaatgatcgagcaaggcgaagccagcgaagcacgcaagtgtgtggaacgcgccaag
cttgatcacctactgggctactgcgagtcaatgcagtgccgccgccaaatgctactggct
agcttcggcgaaacctatccacagccttgtggcaactgcgacaactgtctgaccccagac
atcgcctgggatgccagcgttctctcgcaaaaggcgttgagttgcgtctaccggactggg
cagcgcttcggcgccggacacttgatcgacatcctgcgtgggagtaagagcgaaaaagtc
ttgcaactcggccatgaccaactcagcacctacggcatcggccgcaacgtgaatgaacgc
agttggcgcagtgtatttcgccagctcatcgccgcaagcctgctggaggttgataacgaa
ggccatggcggcttgcgtctgaccgagacaagccgtgcagtcctcaaaggcgaacgccaa
gtgatgatgcgtcgcgatcaggccatacgggaacgcgaccgcgccgggcaacgcagcgga
ctgtcagtcctcccggaagatctggcactgttcaatgccctgcatggcttacgtgcacag
ctggccaaagaacaaaacgtgccagcattcgtcatcttccatgacagcaccttgcgtcat
attgctgaacaacgccctaccagcctcaatgcactggcccaagtcagcggtatcggcagc
agcaaactggcacgctatggccatcagttaatcgaactcgtgcttgcgcagggttga
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