Xanthomonas vasicola pv. vasculorum: C7V42_00185
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Entry
C7V42_00185 CDS
T05388
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xva
Xanthomonas vasicola pv. vasculorum
Brite
KEGG Orthology (KO) [BR:
xva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xva03032
]
C7V42_00185
03400 DNA repair and recombination proteins [BR:
xva03400
]
C7V42_00185
Enzymes [BR:
xva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C7V42_00185
DNA replication proteins [BR:
xva03032
]
Prokaryotic type
DNA Topoisomerases
C7V42_00185
DNA repair and recombination proteins [BR:
xva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C7V42_00185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF7508
Motif
Other DBs
NCBI-ProteinID:
AVQ05320
UniProt:
A0AAE8F9N4
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All DBs
Position
43278..44465
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AA seq
395 aa
AA seq
DB search
MKAKRVLRSAAATVSTTGKLAAVATGAAVATAAVASAAAVAQAKATARAAGLTYVNDQQP
GISRRKAGKSFSYRDADGQRIGDAETLQRIRSLAIPPAYTEVWICAKPNGHLQATGRDAR
RRKQYRYHADWAQVRGEGKFERVSAFGTALPKLRRRLRRDLVLSGFPREKVLAIVVALLA
DTLVRVGNAEYARSNRSYGLTTLRNRHMEFLKGGRARLKFRGKSGQDHDIEVDDKQLVKL
IRECQQLPGQSLFQYRDDDGQLQPVDSGEVNDYLREAMGEDFTAKDFRTWGGTLAALQRL
ARLPLPERSSERALTQVQNDVIREVADALGNTPSVCRKAYIDPRVFEGWRAGQLQAMATG
VRGERQWEAATLKFLTASRSKLKAQAKPASKRKSA
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccaaacgtgttcttcgcagtgccgcagccaccgtaagcaccaccggcaagctt
gctgcggtggccactggtgccgccgtcgctaccgctgccgtggcaagcgcggcggccgtg
gcgcaggccaaggccaccgcacgcgcggccgggctcacgtacgtcaacgatcagcagccc
ggcatcagccgccgcaaggccggcaagagtttcagttaccgcgatgccgacgggcaacgc
attggcgatgccgagaccttgcagcgcatccgttcgctggccattcccccggcgtatacc
gaggtgtggatctgtgccaagcccaacggccatctgcaggccaccggacgcgatgcacgg
cggcgcaagcaataccgttatcacgccgactgggcgcaggtgcgtggcgaaggcaagttc
gaacgcgtgagcgccttcggtactgcgctgcccaaactgcggcggcggttgcgtcgcgat
ctggtgctgtcaggatttccgcgcgaaaaagtattggcaattgtggtggcattgctagcc
gacaccttggtgcgcgtgggcaatgccgaatatgcgcgcagcaatcgctcgtacgggctg
accacgctgcgcaaccggcatatggagtttttgaaaggcggccgcgcgcgactcaagttc
cgcggcaagagcggccaggaccacgacatcgaagtggacgacaagcagctggtcaaactg
atccgcgaatgccagcaattgccggggcaatcgttgtttcagtaccgcgacgacgatggc
cagttgcagccggtggattcgggcgaggtcaacgactatctgcgcgaggccatgggcgaa
gacttcactgccaaggatttccgcacctggggcggcacgctggccgcattgcagcgcctg
gcgcgtctgccattacccgagcgcagcagcgaacgcgcgctgacccaggtgcaaaacgat
gtcatccgcgaagtggccgacgccttgggcaacacaccctcggtctgccgcaaggcctac
atcgacccgcgcgtgttcgaaggctggcgcgcgggccagctgcaggccatggccaccggc
gtgcgcggcgagcgccaatgggaagcagccacgctgaagttcctgaccgcgtcgcgtagc
aagctcaaggcacaggcaaagccggcgtcgaagcggaagtcagcatag
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