Xanthomonas vasicola pv. vasculorum: C7V42_11335
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Entry
C7V42_11335 CDS
T05388
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xva
Xanthomonas vasicola pv. vasculorum
Pathway
xva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7V42_11335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xva03019
]
C7V42_11335
03009 Ribosome biogenesis [BR:
xva03009
]
C7V42_11335
Enzymes [BR:
xva01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C7V42_11335
Messenger RNA biogenesis [BR:
xva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C7V42_11335
Ribosome biogenesis [BR:
xva03009
]
Prokaryotic type
rRNA processing factors
C7V42_11335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
AVQ07113
UniProt:
A0AAE8FBY9
LinkDB
All DBs
Position
complement(2445853..2449527)
Genome browser
AA seq
1224 aa
AA seq
DB search
MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE
RHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFISLAG
RYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQEFM
KQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAVDVN
SSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENKLQN
ALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLSIIR
VAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPHYEV
TRLRENELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAPPAVTSIKPSQPAPVREEAPA
PVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAPESTPRPRQNDAGRNNRNER
GERGGQRRDGRDARNGGNQQRGNGGNGNGANKERRDERRQPASGQGAQNGAQAQQQVQAP
KPPRNEAQAPKQQQPQQSQQQKPKPQNQTPRPPRAPAQQDGAQAERQPRPARQDEGTAAA
QTLTSTAATATTSSVVAAIADAAAPATARTIANEAAQAHPVDVMVSESTADRGTDANTGV
PTQDGAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGASVDGLEGDDLDGDADNDLD
GDNEADAAGTQAHVSAAARAGQPEFDFDDDAPAPAVRAKPEPTAQAAAKPRPVPKERAEP
ELGNDTSSTTAPVSSTVPASQPAAAPVAKADADHKHADAPTVAADAPAKPAPAATAPTAV
NADVAATRAVEQRPAPVAQQAAAAPAPVAAPAPVASTPAPAVAPVAETASTTPAAPVPAP
ALATPVTNHAPASTPQYQPLHSASASVAAPAAEETAAAKADQQQRAASADVAPPAEQAAP
VQKAAAMPAAELSAPVAATPAAQAEVVTVTSPPAERSAPPASSAEVAVTATSTVAQASPS
ADATPVRKPYAPVQTTMLDALSPKDAATSASSVSEHPAPAATTQESDADKPKPTVVVSEV
KPVAPSTEADKAQENDSNKPRGDH
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggacggccagacc
ctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaacatctataag
ggccgtatcacacggctcgagccttctctggaagcggcgttcgtggactacggcgccgag
cgtcatggcttcctgccgctgaaggaaatttcccgcgattacttccaggccggcgtcgac
cataacaagtcgaccattcgcgagctgttgcgcgagggccaggaaatcgtggtgcaggtc
gataaggaagaacgcggcaacaagggcgctgccctaaccacgttcatttcgctggccggc
cgctacatggtgctgatgcccaattcgccgagcgccggtggcgtttcgcgccgcatcgaa
ggcgaagaccgcgccgcgctgaaggaagcgctggacaagctcgatattccggacgacatg
ggcgtaatcatccgcaccgccggtgtgggccgcgatgccgaagagctgcagtgggatctg
gactatctgctgcagacctggaaagcgattgccgaggctgcactgagcaagccggccgcg
ttcctgatctaccaggaatcgcgcttgatcatccgcgccctgcgcgactacctgcgcgcc
gatgtcggcgagatcctggtcgatacgccggaactgtatgccgacgcccaggaattcatg
aagcaggtgatgcctcagagcctgcgcaagctcaagcactacaccgacgacattccgctg
ttcaaccgcttccagatcgaatcgcagattgaaggcgcctatgagcgcaacgtgcgcctg
ccctcgggcggctcgatcgtggtcgaccagaccgaagcgctcaccgccgtcgacgtaaac
tcctcgcgcgccaccaagggcagcgatatcgaggaaaccgcgttccagaccaatctggaa
gcggccgaagaagtggcacgccagctgcgcctacgcgacctgggcggcctggtggtcatc
gacttcatcgacatggcctcgtccaagcaccagcgcgaagtcgaaaacaagctgcagaac
gcgctcaagtacgaccgcgcccgtgtgcagctgggccgtatctcgcgcttcggcctgatg
gaaatgagccgccagcgcctgcgtccgagcctgggcgaatccagccagatcgtctgcccg
cgttgcgatggccatggccgcatgcgcagcgtcgagtcgctgtcgctgtcgatcatccgc
gtggccgaagagcacgcgatgaaggaaaacaccgggcaagtgctggtccaggccccggtg
gagatcgccaactacctgctcaacgaaaagcgtagcgcgctgcgcgagatcgaaaatcgc
cacgcctcgccgatcatcatcgttgccgatgagcagctgcacaccccgcactacgaagtc
acgcgcctgcgcgagaacgagttgggcgaagacagcggcaagccgagttaccagcgcggc
accccacgcaagctgccggtgcatgcgctgaccaaggcgcagttgaacatcccggcacct
ccggcagttacttcgatcaagccgagccagccggctccggtgcgtgaagaggcccctgcc
ccggtggcgccagtcgcggctccggcaccggtggtcaccgtgccgattccggcaccggtc
accggcgtggtcggctggttgaagcgcatcttcggcggcgtcgagccggtcgctcctgct
cccgagtcgactccgcgcccgcgtcagaacgatgccggccgcaataaccgtaacgaacgc
ggcgagcgtggcggtcaacgtcgcgacggtcgcgatgcccgcaatggcggcaatcagcag
cgtggcaatggtggcaatggcaacggcgccaacaaggaacgccgtgacgagcgccgccag
ccagccagcggccagggcgcgcagaacggagcacaggcacagcagcaggtgcaggctccc
aagccgccgcgcaatgaagcgcaggcaccgaagcaacagcagccgcagcagtctcagcag
cagaagcccaagccgcagaaccagacgccgcgcccgccgcgtgcaccagcacagcaggac
ggcgcgcaagctgagcgtcagccacgtccggcacgtcaggatgaaggcacggcggcagcg
cagaccctcacatcgactgccgcaacggcaacgacgtcgagcgtggtggctgccattgcc
gatgccgctgcacctgccactgcgcggaccatcgctaatgaagcagcgcaggcgcatccg
gttgacgtcatggtaagcgagtccaccgctgatcgcggtaccgacgcaaatacgggtgta
ccgacccaggatggcgcgggcgacgatgcagccaatggcgaaggcggaagccgtcgccgt
cgcggtcgtcgtggtggccgtcgtcgtcgtcgtggcgctggtgccaacggcgaaggcgga
gccagcgtcgatggtctggaaggcgacgacctggacggcgatgccgacaacgatctcgat
ggcgacaacgaagctgacgccgccggtactcaggcgcatgtctcggccgcagcgcgtgca
ggccagccggagttcgacttcgatgacgacgcaccggcacctgccgtgcgcgccaagccc
gaacctactgctcaggcagccgccaagccgcgcccggttcccaaggagcgtgcagagcca
gaactcggcaatgacacgtcctcgaccactgcgccggtgtccagcaccgtgccggcatcg
cagccagcagcagcacctgttgccaaggctgacgctgaccacaagcatgcagatgcaccg
accgtggccgccgatgcacctgccaagcccgcgccggccgccacagcgccgaccgccgtc
aatgctgatgttgcggcaacgcgagctgtggaacagcgccctgctccggtcgcgcagcaa
gctgccgctgccccggcaccggttgctgctccggcacccgtggcatccacgccggcgccg
gctgtggctcccgtcgccgagaccgcatcgacgacacctgctgctccggtcccggcaccg
gctctcgcaacgcctgtgacaaaccatgctccggcaagcacaccacagtaccagcctctg
cactcggcgtcggctagcgttgctgcgcccgccgcagaggagactgcggcagcgaaggcc
gaccagcagcagcgcgctgcttcggcggacgttgcaccacctgcggagcaagcggcgccg
gtccagaaggcagctgcaatgcctgctgccgagctatcggcacctgtggcagcaacgccg
gctgcgcaggccgaggtagttacggtcacgtcgccgcccgccgaacggtctgctccgccc
gcgtcatcggcggaggtggccgtgaccgctacatcgacggtcgcgcaggccagcccgagt
gcagacgctacgccagtacgtaagccgtatgcccctgtgcaaaccaccatgcttgatgcg
ttgagcccgaaggatgctgcaacgtcagcctcctcggtcagcgagcatccggcgcctgct
gcaacaacgcaggagtcggacgcagacaagcccaagccgacggtggttgtgtccgaagta
aagcctgttgccccatcgaccgaggccgacaaagcgcaggaaaatgacagcaacaagccg
cgtggcgatcactga
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