Xanthomonas vasicola pv. vasculorum: C7V42_13645
Help
Entry
C7V42_13645 CDS
T05388
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xva
Xanthomonas vasicola pv. vasculorum
Pathway
xva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7V42_13645 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xva03019
]
C7V42_13645 (pnp)
03016 Transfer RNA biogenesis [BR:
xva03016
]
C7V42_13645 (pnp)
Enzymes [BR:
xva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
C7V42_13645 (pnp)
Messenger RNA biogenesis [BR:
xva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C7V42_13645 (pnp)
Transfer RNA biogenesis [BR:
xva03016
]
Prokaryotic type
tRNA degradation factors
C7V42_13645 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
S1_2
DUF7680
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AVQ07498
UniProt:
A0AAE8F494
LinkDB
All DBs
Position
complement(2978449..2980563)
Genome browser
AA seq
704 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAG
TANAVLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKNDG
MIAALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGVLAPRATIEGWAAGDLSKEFGE
LEYQTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVPASAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcaccctcgagacgggc
gaaatcgctcgccaggcaggcggtgccgtcatcgttaagttcgacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaagggcaggacttctttcctctgacggtt
gattatcaggagaagttctacgctggcggccgcatcccgggcggcttcttcaagcgcgaa
ggacgcgcgaccgagaaggaaacgttgatctcgcgcctgatcgatcgcccgatccgtccg
ctgttcccggaggactacaagaacgaagtgcagatcatcgccaccgtgatgtcgatgaac
ccggacatcgacggcgatatcgccgcgctgatcggcgcatcggccgcgttgtcgctggcc
ggcaccccgttcaacggaccgatcgctgcggcgaaggtgggttacaagaatggcgaatac
atcctcaacccgaccgtgaccgagctgaaggattcgcagctggagctggtcgtggccggt
accgccaatgcggtgctgatggtcgagtccgaagccgagctgctgtcggaagaagtgatg
ctgggcgcggtgacgttcggccatcgcgagatgcagaaagtcatcaacatcatcaacgag
ctgaccgtcgaagccggcaccaagccgtccgattgggtggccccggcgaagaacgacggc
atgatcgccgcactgaaggaagcagtgggcgaccagctcgcttcggcgttccaggtgcgc
gacaagctgcagcgccgcgatgcgatttcggccatcaagaaagacgtgctgggtgtgctg
gcgccgcgcgccacgatcgaaggctgggctgccggtgatctgtcgaaggaattcggcgag
ctggaataccagaccatgcgcggctcggtgctgagcaccaaggtgcgtatcgacggtcgc
gcgctggacaccgtgcgtccgatcagtgccaaggctggcgtgttgccgcgtacccacggt
tcggcgctgttcacccgcggcgaaacccaagcgatcgtgatcaccacgctgggcaccgcg
cgcgacggtcaggtcatcgacgccgtctcgggcgagtacaaagaaaacttcctgttccat
tacaacttccctccatactcggtgggcgagtgcggtcgtttcggtgcgccgaagcgtcgc
gaaatcggtcatggccgtctggccaagcgcggcgtgctcgccgtgatgccgagcctggaa
gaattcccttacaccatccgtgtggtttcggaaatcaccgagtccaacggttcgtcctcg
atggcatcggtctgcggcagctcgctggcgctgatggacgccggtgtgccgatcaaggca
ccggttgccggtatcgcgatgggtctggtcaaggaaggtaacgacttcgtcgtgctctcc
gacatcctgggtgacgaagaccacctcggcgacatggacttcaaggtggccggtactgcc
gaaggcgtgtccgcgctgcagatggacatcaagatcgaaggcatcaccgaagaaatcatg
aagcaggcactgcagcaggccaaggctggccgtctgcacatcctgggcgagatggcgcat
gcgctgaccaccccgcgtcaggagctgagcgactacgcgccgcgcctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggcggctcgaccatccaggccatc
accaaggaaaccggtacgcagatcgacatccaggacgacggcacgatcatcatcgcctcg
gtgaatgcaatcgctgcgcaggctgcaaagtcgcgcatcgagcagatcacctcggacgtg
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
accatcctgccgggcaaggatgggctggtgcacgtctcgcagatttctagcgagcgcgtg
gagaaggttggcgacaagttgaaggaaggcgatctggtccgcgtcaaggtgctggaagtg
gacaaacagggccgcatccgtctgtcgattaaggcagtggaagaaggcgaaggcgtgccg
gcttcggccgagtaa
DBGET
integrated database retrieval system
