Xanthomonas vasicola pv. vasculorum: C7V42_18135
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Entry
C7V42_18135 CDS
T05388
Name
(GenBank) rhamnogalacturonase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
xva
Xanthomonas vasicola pv. vasculorum
Brite
KEGG Orthology (KO) [BR:
xva00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
C7V42_18135
Enzymes [BR:
xva01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
C7V42_18135
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Gene cluster
GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
PapC_N
Motif
Other DBs
NCBI-ProteinID:
AVQ09187
UniProt:
A0AAE8F5Q4
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All DBs
Position
3997647..3999248
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AA seq
533 aa
AA seq
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MPRNRLHTFACALLLYAGVSAPALAEFGFTRSGDRVIVDSGAELVFSVNVNNGDIVSMRY
RDNELQTTESKGSHIASGLGNASVDARVVGGTVVVSAKAGDLIQYYIVHKGRNAIYMATY
APTLLPIGELRFVARLNVSKLPNAQQEPDSNVGTAIEGKDVFLLPDGRTSSKFYSARRMM
DDQVHGVSGSGVAVFMLMGNREHSAGGPFFKDIATQKTSVTHELYNYMYSDHTQTEAFRG
GLHGVYGLLFTDGGVPSNAQLNTDFVDATLGLSGYLPASGRGGVSGRVSGVLPGQPAVIG
LRNAQAQYWATANGSGDYQVAGVRPGRYRMTLYQNELEVTQCDIEIFANATAQATLRAVA
LPGTLKWQIGIPDGTPAGFLHADLLPHAHPSDARMRWSPATYTVGSSSLSSFPAVQWRGI
NAPSRIDFSLAATEVRGYRLRIFVPLAQVSARPQISVNAHWNGPVPAAPTQPKTRGITRG
TTRGNNTLYEVDIPASALQAGSNRIEISIAPGSPDNGYLSPAIVFDSIQLVAL
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtaatcgcctgcacacctttgcctgcgcgctattgctctatgccggcgtcagc
gcacctgcgctggccgaatttggattcacccgcagcggcgaccgcgtgatcgtcgacagc
ggcgccgagctggtgttttcggtcaatgtaaataatggcgatatcgtgtcgatgcgctac
cgcgacaacgaactgcagacaaccgaatcgaagggctcgcacatcgcatcggggctaggc
aatgccagcgtggacgcacgcgtcgtcggtggaacggttgtagtgtcggcaaaggccggc
gatctgatccagtactacatcgtgcacaagggccgcaacgcgatctacatggccacctat
gcgccaactttgctgccgataggcgaattgcgcttcgtcgcccgcttgaatgtatccaag
ttaccgaatgcgcagcaggaaccagattccaacgtcggcacagcgatcgaaggcaaggat
gtctttctgctgccggatgggcgcaccagttccaaattctattccgcacgtcgaatgatg
gatgaccaggtgcatggcgtcagcggctccggcgttgccgtgtttatgctgatgggcaac
cgcgagcacagcgcgggcgggccattcttcaaggacatcgccacgcaaaagaccagcgtg
acgcatgagctctacaactacatgtattccgaccacacccagaccgaagcgtttcgtggc
ggcctgcatggcgtgtacgggctgttgttcaccgatggcggcgtgccgtccaatgcgcag
ctcaataccgatttcgtcgatgccacgttaggcctgagcggctatctgccagcgagcggg
cgcggcggagtaagtgggcgcgtgagcggcgtgctgcccggccagcctgccgtcatcggc
ttgcgtaacgcgcaggcgcaatactgggctaccgctaatggcagcggcgattatcaggtt
gccggtgtgcgcccagggcgctatcgcatgacgctctaccaaaacgaactggaagtgacg
cagtgtgatatcgagatcttcgccaatgccaccgcacaagccacactgcgggcggtcgcc
ttgcccggcacattgaaatggcagatcggcattcctgatggcacaccggcggggtttctg
cacgcggacttgttgccgcatgcgcacccttccgatgcgcgcatgcgctggtctccggcg
acctacaccgtcgggtcgagcagcctaagcagcttcccggcggtgcagtggcgcggcatc
aatgcccctagccggatcgacttcagcctggccgccaccgaggtacgcggctatcgcctg
cgcatcttcgtgcccttggcacaggtcagcgcacgcccacaaatcagcgtgaatgcccac
tggaacggcccggtgcctgctgcccccacgcaaccaaagacacgcggtatcacgcgcggc
acgacgcgcggcaacaacaccctgtacgaagtggacattcccgcatctgccttgcaggcc
ggcagcaaccgcatcgagatcagcattgcccccggctccccggacaacggctacctcagc
ccggcaatcgtgttcgacagcatccagctggtcgcgttgtga
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