Xanthomonas vasicola pv. vasculorum: C7V42_18525
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Entry
C7V42_18525 CDS
T05388
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xva
Xanthomonas vasicola pv. vasculorum
Pathway
xva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7V42_18525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xva03019
]
C7V42_18525
Enzymes [BR:
xva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C7V42_18525
Messenger RNA biogenesis [BR:
xva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7V42_18525
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
AVQ08295
UniProt:
A0AAE8F3L3
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All DBs
Position
4078127..4079509
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AA seq
460 aa
AA seq
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MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALELMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRSSGPRQANAGAGAGRRDGGRGGQRPSGTR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tatgaaacccccactgcgatccagcagcaggcaattccgctggtgctggccggtcacgat
ctgctggccggcgcgcagaccggcaccggcaagacggctgcgttcggcctgccgctgctg
cagcacctgggcacctcgccgcagccggtcaacggcccgcgcaagccgcgcgcgttgatt
ctgaccccgacccgcgaacttgccacccaggtgcatgacagcctgcggggctacagcaag
tacctacgcatccccagcgcggtgatctacggcggcgtgggcatgggcaaccagctcgac
gcgctgcgtcgtggcgtggacctgctgatcgcctgcccgggccgcctgatcgaccatatc
gagcgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgaccgc
atgctcgacatgggcttcttgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgtcaaaccctgctgttctcggcgaccttcgaagagaacatcaagcagctggcgctg
gagttaatgcgcaacccgatgcagatccaggtcaccccgagcaacactgtggccgagagc
atcacccaccgcgtgcacccggtcgatggcgcgcgcaagcgcgatctgctgctgcacctg
ctggcgcaggacagccgcgagcagaccctggtcttcgcgcgcaccaagcacggcagcgac
aaactggcgctgtttctggagaagtccggcatcaagaccgcggcgatccacggcaacaag
agccagggtcagcgcatgcgtgccttgagcgacttcaaggccggccgcgtgaccgtgctg
gtggccaccgatatcgccgcgcgtggtatcgatatcgaccagctgccgaaggtcatcaac
tacgacctgccgatggtggccgaggattacgtgcaccgcatcggccgcaccggccgtaac
ggctccaccggcgaggcgatttcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcatgctgggccgcgacgtggaaatccgcgacgtgccgggctacgagccgcaa
accccgatccgttggggcaatagcgcaccgggacgtgccgagcagccgggtggcgatcgc
gctccgcgcaagagccacgcccgtcgcccgcatggcgatgcaccgcgtcaggcgcatgca
catgccggcccgaagaagccgggtggccagcgcagcagtggtccgcgtcaggccaatgcc
ggtgctggcgcaggccgtcgcgacggcggccgcggtggccagcgtccgagcggcacgcgc
taa
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