Xanthomonas vesicatoria: BJD12_02055
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Entry
BJD12_02055 CDS
T04741
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xve
Xanthomonas vesicatoria
Pathway
xve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJD12_02055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xve03019
]
BJD12_02055
03009 Ribosome biogenesis [BR:
xve03009
]
BJD12_02055
Enzymes [BR:
xve01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BJD12_02055
Messenger RNA biogenesis [BR:
xve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BJD12_02055
Ribosome biogenesis [BR:
xve03009
]
Prokaryotic type
rRNA processing factors
BJD12_02055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
APP74242
UniProt:
F0BKF4
LinkDB
All DBs
Position
479167..482898
Genome browser
AA seq
1243 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ
EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENK
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIENRHASPIIIVADEQLHTPH
YEVTRLRENELGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPVREE
APAPVAPTPAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPVAPAAESLPRPRQNDAGRNNR
NERGGQRRDGRDARNGNGGNQQRGSGNGANKERRDERRQPANGQNGQAAQAGAQAQQQVQ
VPKPPRNEAQAPKQQQQQQQQKPKQQNQTPRPPRAPAQQDGVPSERQPRPARQDEGTASA
QTLTTTAATATTSTVVAAIAETAAETNKPTTANEANQAHPVEVVVSESTADRGTDASADG
QTQDASGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGSSVDGLDTDDLDGDSDSDLD
ADNEGDDAGTQNAASAAPRAGQPEFDFDDDAPAPSVRTKPEANAAAALKPRPVPKERAET
QSDSDTTSTTAPVSNATPSFEQQVSAPVAGAADQKRGDASVAATSAAKPTVSAPAVASPQ
AASVADTATSAAARAATQAPVADATRSVTQTATASTPADHTVAAAPPAATPVADAASTAP
VAVSKPVEPSAPNASTAEATADAQPKPVPKAPTDTTTAAPSADAQARAVPAASATPAVQS
EPVKPAAAAPAGSQTPVATAQPAARAAVVTANAPHSEPANAVKPSVDVAVTSTATVPQSA
AAASEDAPAAPVRKPYAPVQTTMLDALAPNADAAAPSAAATPVSPEQSPPAVPQAPAPVQ
EQAADKPKPTVVVSEAAKPAAPSVDIDGASVQEDDADKPRSDH
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggcagaagaactgcgcgtggcgattgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaac
atctacaagggccgtattacccggctcgagccctctctggaagcggcgttcgtggactat
ggtgccgagcgccatggcttcctgccgttgaaggaaatttcccgcgattacttccaggcc
ggcgtcgaccataacaagtcgaccattcgcgagctgctacgcgaaggccaggaaatcgtg
gtgcaggtcgacaaggaagaacgcggcaacaagggcgctgccctgaccacgtttatttcg
cttgccggccgctacatggtgctgatgcccaattcgccgagcgccggtggcgtttcgcgc
cggatcgaaggcgaagaccgcgccgcgttgaaggaagcgctggacaagcttgatatcccc
gacgacatgggcgtgatcatccgcaccgccggtgtcggtcgtgacgccgaagaactgcag
tgggatctggattacctgctgcagacctggaaggcgatcgccgaggctgcgctgagcaag
ccggctgcgttcctgatctatcaggaatcgcgcctgatcattcgcgcactgcgtgactac
ctgcgcgccgacgtcggcgaaatcctggtcgatacgccggagctgtatgccgacgcccag
gaattcatgaagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
attccgctgttcaaccgcttccagatcgaatcgcagatcgaaggcgcctacgagcgcaac
gtgcgcctgccgtcgggcggctcgatcgtggtcgatcagaccgaagcgttgacggcggtc
gacgtgaactcctcgcgcgccaccaagggcagcgacatcgaagaaaccgcgttccagacc
aacctggaagcggccgaagaagtcgcgcgccagctgcgcctgcgcgacctcggcggcctg
gtggtcatcgacttcattgatatggcttcgtccaagcaccagcgcgaagtcgaaaacaag
ctgcagaatgcgctcaagtacgaccgtgcgcgcgtgcagctgggtcgcatctcgcgcttc
ggcctgatggaaatgagccgccagcgtctgcgtccgagcctgggtgaatccagccagatc
gtatgcccgcgttgcgatggccatggccgcatgcgcagtgtcgaatcgctgtcgctgtcg
atcatccgcgtggccgaagaacacgcgatgaaggaaaacaccggacaggtgctggtccag
gccccggtggagatcgccaactacctgctcaacgaaaagcgcagcgcgctgcgcgagatc
gaaaatcgccacgcctcgccgatcatcatcgtcgccgacgagcaactgcacacgccgcat
tacgaagtcacgcgcctgcgcgagaacgagttgggcgaagacagcggcaagccgagctat
cagcgcggcaccccgcgcaagttgccggtgcatgcgctgaccaaggcgcagttgaacatt
ccggcagcgcctgcggtgacctcgatcaaaccgagccagccggccccggtgcgtgaagag
gcccctgccccggtcgcgccgacaccggcgccagccccggttgtcaccgtgccgattccg
gcaccggtaaccggcgtggttggatggttgaagcgcatcttcggtggtgtcgagccggtc
gctcctgcagccgagtcgctcccgcgtccgcgtcagaacgatgcaggccgcaacaatcgt
aacgagcgtggcggtcaacgtcgcgacggccgcgatgcccgcaacggcaacggtggcaat
cagcagcgcggcagtggcaacggtgccaacaaggagcgtcgtgacgagcgccgccagccg
gcgaacggccaaaacggccaggctgcccaagccggtgcccaggcccagcagcaggtgcag
gtacccaagccgccgcgtaacgaagcgcaggcgccgaagcaacagcaacaacaacagcag
cagaagcccaagcagcagaaccagacgccgcgtccgccacgtgcgcctgcgcagcaggac
ggtgtgccgtccgagcgtcagccgcgtccggcccgtcaggatgagggcaccgcttcggcg
cagaccctgaccacgaccgccgcaactgcaaccacgtcgactgtggtcgccgccattgcc
gagaccgctgcagagaccaataagccaaccaccgcgaacgaagccaaccaggcccacccg
gtcgaggtcgtcgtgagcgagtcgactgccgatcgcggcaccgacgcgagtgcggatggc
cagacccaggacgcgtcgggcgacgatgcggccaatggcgaaggtggaagccgtcgtcgc
cgcggtcgtcgtggcggtcgtcgtcgtcgtcgtggcgccggtgcaaatggtgaaggcggc
agcagcgtcgatggtctggatacagatgatctcgatggtgattccgacagcgatctcgat
gccgacaacgagggcgacgatgccggtacgcagaacgcggcatccgccgctccgcgtgca
ggtcagccggagttcgattttgacgacgatgccccggccccgtccgttcgtaccaagccc
gaagccaatgcagcggcagcgctgaagccgcgtccggttcccaaggaacgtgcggaaacg
caatcggacagcgacacgacgtcaacgacggcgccggtctccaacgccactccgtcgttc
gagcagcaggtctctgcacctgttgccggagcagccgatcagaaacgcggtgatgccagc
gtggcagctacctcggcagccaagccgaccgtttctgccccggcagtggcctcgccccaa
gctgcgtcggtagccgacactgcaacttcggcagctgcgcgggccgccacgcaagctccg
gtcgctgacgcaacgcgaagcgtcacacagactgcgactgcctcgactcctgctgaccac
acggttgctgctgcgccacctgctgcaaccccggttgcagatgcggcatcaactgcaccg
gttgcggtcagcaagcctgtcgagccttctgcaccgaatgcatcgacggccgaagcaacc
gccgacgcacagcccaagccggtaccgaaagcaccgaccgacactacgactgcagcaccg
tcggccgatgcgcaagcgcgtgcggttccggctgccagtgcaacacctgcagtgcaatcg
gagcccgtgaagccggcagcagcggcgcccgctgggtcgcaaacgcctgtagcaacggca
cagccggcagcacgggccgccgtggtcaccgccaatgcgccacatagcgaaccggccaat
gcggtcaagccttcggtagacgttgctgtgacatccaccgcaacggtgccgcagagtgcc
gccgcagcgtccgaggatgcgccggccgctccggttcgcaagccgtatgcaccggtgcag
acgaccatgctggatgcgctggctcccaatgccgacgcagctgctccgtcagcggctgcc
acgcctgtatcgccggagcagtcgccgccagcagtaccgcaggcacctgcccctgtgcag
gaacaggcagccgacaagcctaagccgactgtggtcgtctccgaagcggccaagcctgca
gcgccgtccgttgacatcgatggtgcatcagtacaggaagatgacgccgacaagccgcgc
agcgatcactga
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