Xanthomonas vesicatoria: BJD12_08955
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Entry
BJD12_08955 CDS
T04741
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xve
Xanthomonas vesicatoria
Pathway
xve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJD12_08955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xve03019
]
BJD12_08955
Enzymes [BR:
xve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJD12_08955
Messenger RNA biogenesis [BR:
xve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJD12_08955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
APP75359
UniProt:
F0BCX2
LinkDB
All DBs
Position
2071154..2072539
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AA seq
461 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRNAGPRQANAGAGAGRRDSRGGAGRPANRGA
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tatgaaacccccactgcgatccagcagcaggcgatcccgttggtgctggccggtcacgac
ctgctggccggcgcgcagaccggtaccggcaagaccgccgcgttcggcctgccgctgctg
cagcacctgggcaccagcccgcagccggtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgagctggccacccaggtgcacgacagcctgcgcggctacagcaag
tacctgcgcatccccagcgcggtgatctacggcggcgtgggcatgggcaaccagctcgac
accctgcgtcgtggcgtggacctgctgatcgcgtgcccgggccggctgatcgatcatatc
gagcgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgatcgc
atgctcgacatgggcttcttgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgtcagacgctgcttttctcggccacctttgaagagaacatcaagcagttggcgctg
gaattcatgcgcaacccgatgcagatccaggtcaccccgagcaacaccgtggccgagagc
atcacccaccgcgtgcacccggtcgatggcgcgcgcaagcgcgatctgctgctgcacctg
ctggcgcaggacagccgcgagcagaccctggtgttcgcacgtaccaagcacggcagcgac
aagctggcgctgttcctggagaagtccggcatcaagaccgcggcgatccatggcaacaag
agccagggccagcgcatgcgtgccctgagcgacttcaaggccggccgcgtgaccgtgctg
gtggccaccgatatcgccgcacgcggcatcgatatcgaccagctgccgaaggtcatcaac
tacgacctgccgatggtcgccgaggattacgtgcaccgcatcggccgcaccggccgtaac
ggttccaccggcgaggcgatctcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcatgctgggccgcgacgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgttggggtaacagcgcgccgggccgtgccgagcagccgggcggcgatcgc
gcaccgcgcaagagccacgcccgtcgtccgcatggcgatgcaccgcgtcaggcgcatgcg
catgccggcccgaagaagccgggtggccagcgtaatgctgggccgcgtcaggccaatgcg
ggcgcaggtgccggccggcgcgacagccgtggcggcgctggccgtccggccaaccgcggc
gcctga
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