Xanthomonas vesicatoria: BJD12_12050
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Entry
BJD12_12050 CDS
T04741
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
xve
Xanthomonas vesicatoria
Pathway
xve03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BJD12_12050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xve03400
]
BJD12_12050
Enzymes [BR:
xve01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BJD12_12050
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BJD12_12050
DNA repair and recombination proteins [BR:
xve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BJD12_12050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
APP77814
LinkDB
All DBs
Position
complement(2783109..2783924)
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AA seq
271 aa
AA seq
DB search
MPELPEVETTVRGLAPHLVGQRIHGVILRRPDLRWPIAEQIERLLPGATITQVRRRAKYL
LMDTDAGGSALLHLGMSGSLRVLPGDTLPRAHDHVDISLENGRVLRFNDPRRFGCLLWQS
DTQQHELLAALGPEPLSQAFTGDYLYALSRGRRAAVKTFLMDQAVVVGVGNIYAAESLHR
AGISPLREAGKVSLERYRSLATAVKDILGYAIQRGGTTLRDFISPDGAPGYFEQELTVYG
REGEPCKQCGRALKHATIGQRATVWCGHCQR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccggagttgcccgaagtcgaaactaccgtgcgcggacttgcgccgcatctggtcggg
caacgtatccacggggtgattctgcgccggcctgacttgcgttggcccatcgccgagcag
atcgaacgcttgcttcccggagccaccattacgcaggtccgtcgacgtgccaagtatctg
ctgatggatactgatgccggaggtagtgcgttgctgcatctggggatgtccggcagcctg
cgtgtactgcccggcgataccttgccgcgtgcacatgatcatgtggatatcagccttgaa
aacggccgcgtactgcgcttcaacgacccgcgtcggttcggttgtctattgtggcaatcc
gatacgcagcagcatgagttgctcgctgcgttaggtccggagccattatcacaagcattt
actggcgattatctttatgcgctgtcgcgcggccgtcgtgctgcggtcaagacctttcta
atggatcaggccgtggttgttggggtcggcaatatctatgcggctgaaagcctgcatcgg
gcgggaatcagtccgctgcgcgaggctggaaaggtgtcgctcgagcggtaccggagcctg
gcgactgctgtaaaagacatcctgggttatgcaatccagcgtggtggcacgacgttgcgc
gacttcattagtccggacggtgcacccgggtatttcgagcaggaattgacggtctacggt
cgcgagggcgagccttgcaaacagtgcgggcgtgccttgaaacacgcaacgattgggcag
cgcgcgacggtgtggtgcggtcattgccagcgttga
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