Xanthomonas vesicatoria: BJD12_13160
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Entry
BJD12_13160 CDS
T04741
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xve
Xanthomonas vesicatoria
Pathway
xve03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BJD12_13160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xve03400
]
BJD12_13160
Enzymes [BR:
xve01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BJD12_13160
DNA repair and recombination proteins [BR:
xve03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BJD12_13160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
APP76020
UniProt:
F0BKV2
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All DBs
Position
3045456..3047573
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AA seq
705 aa
AA seq
DB search
MTVDAHAAKRTAQEGSWRARALALDGARDAPCPTDLRAQLTLLRAHAPDGDPWLHEIKWD
GYRLLADLVDGRVQLRSRNDQAWTDRFAEVVSALQALPVRDARLDGELVVLDAQGRSDFS
ALQRALDGSAQQPLRYLVFDLLGVAGVDLRNTPLLQRKQLLRALLGDTPGTLAYSDHVIG
HGPEVFAASAGKGWEGIVSKRTDAAYHGGRGADWVKTKHEDSDEFVVVGYTDPKGARSGF
GALLLAQPDGEALRYVGRVGTGFDDALLGKIITQLRALRSDTATLQLPSHLPGRPRDVYW
VRPELIAEVAFRGWAKQGLLRQAAFKRLREDKPMTDLGGDRAVPAKRATKPRAAAAKATV
ATPKTATANVSKTASGVATTAAGKRAAKAASKSSTSAASIVTAAVSVTSKKAAPSTDGVT
ITHPERVVFPALGISKGDVAEYYRAVAPLVLAEIARRPLSLLRCPDGVGGDCFFQKHQGR
QLGAHIEAIPLQQKSGTEDYLYIEDAAGLLELVQMNTLELHPWGSHIDDPEHPDRLVFDL
DPGDAVAWPDVVAAARDIRTKLRAVGLESGVRLSGGKGVHVVVPIVPEASWEQARDFCEA
FAQALATQAPERYVATMSKAKRHGVIFVDWLRNGRGNTSVCSWSLRAREKAIVAVPLRWE
ELGKISGPDAFPIDKAVQRAKRQRADPWASVLALRQSLPTGDDKN
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtggatgcgcacgctgccaagcgcacggcccaagagggctcttggcgtgcccgt
gcactggcattggacggcgcacgcgatgcgccgtgtccaaccgatttgcgcgcgcaactg
acattgctgcgcgcgcacgcgccagacggcgatccctggctgcacgaaatcaaatgggac
ggatatcgcctgctggcggacctggtcgatggccgcgtgcagctgcgctcgcgtaacgac
caggcctggacggaccgctttgcggaggtggtgagcgcgctgcaggcgttgcccgtgcgc
gatgcgcggttggatggcgagctggtggtgctggatgcgcaggggcgcagcgatttctcc
gccttgcaacgggcgctcgatggcagcgcgcagcagccgctgcgctatctcgtgttcgat
ctgctgggtgtggctggcgtcgatctacgcaacacgccgctgctgcagcgcaagcagctg
ctgcgtgcattgctgggcgacacaccgggcacgctggcctatagcgaccatgtcatcggg
cacgggccggaggtgtttgcggccagtgccggcaagggctgggaagggatcgtcagcaag
cgtaccgacgctgcctatcacggcggccgcggtgcagattgggtcaagaccaagcatgaa
gacagcgacgaatttgtcgtggtggggtataccgaccccaagggcgcgcgcagcggcttc
ggggcgttgctgcttgcgcaaccggacggcgaggcgctgcgctacgtgggccgcgtggga
accggtttcgatgacgcgctgctgggcaagatcatcacccagctgcgggcgctgcgcagc
gacaccgccacgttgcaactgccgtcgcatctgccgggccgcccacgcgatgtgtattgg
gtacggccggagctgattgccgaagtggcattccgcggctgggccaagcaggggctgctg
cggcaggccgctttcaagcgtttacgcgaggacaaacccatgaccgatctgggcggcgat
cgcgccgtaccggccaaacgcgcgaccaagccacgcgctgcggcagccaaagcgactgtg
gcgacaccaaagaccgcaaccgcaaacgtctccaagaccgccagtggcgttgcgacgacg
gcggcaggcaaacgcgcggccaaggcagcgtccaagagcagtacatctgcagcatcgatc
gtcaccgccgctgtctcagtcacgtcgaagaaggcagcgccgtccaccgacggcgtcacc
atcacccatccggagcgtgtggtgttccctgcgctgggcatcagcaagggagacgtggcc
gagtactaccgtgcggtggcgccgttggtgttggcggagatcgcacgccggccgttgtcc
ctgctgcgctgcccggatggcgttggtggcgattgcttctttcagaaacaccagggccgg
cagctaggtgcgcatatcgaggcgattccgctccaacagaaaagcggcaccgaagattat
ctgtacattgaggatgccgccggcctgctcgaactggtgcagatgaacacgctggagttg
catccctgggggtcgcacatcgacgatccggagcacccggatcgcctggtgttcgatctg
gatccgggagatgccgttgcctggcccgacgtagtggctgccgcgcgcgacattcgcacc
aagctacgcgcggtggggctggaaagcggagtgcgcttatccggtggcaaaggcgtgcac
gtggtggtgccgatcgtgccggaagccagttgggagcaggcgcgcgacttctgcgaagca
tttgcgcaggcactggccacgcaggcgccggagcgctacgtcgccaccatgagcaaggcc
aagcggcacggggtgatctttgtcgactggctgcgcaacggccgcggcaacaccagcgtg
tgttcgtggtcgctgcgcgcccgcgaaaaagccatcgtggcagtgccgctacgctgggaa
gaactgggcaagatcagcggcccggacgccttcccgatcgacaaggccgtgcagcgtgcc
aagcgccaacgcgcagatccctgggcatcggtgctggcgttgcggcaatccttgcccacc
ggcgatgataaaaactaa
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