Xanthomonas vesicatoria: BJD12_20445
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Entry
BJD12_20445 CDS
T04741
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xve
Xanthomonas vesicatoria
Pathway
xve03030
DNA replication
xve03430
Mismatch repair
xve03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BJD12_20445
03430 Mismatch repair
BJD12_20445
03440 Homologous recombination
BJD12_20445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xve03032
]
BJD12_20445
03400 DNA repair and recombination proteins [BR:
xve03400
]
BJD12_20445
Enzymes [BR:
xve01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BJD12_20445
DNA replication proteins [BR:
xve03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BJD12_20445
DNA repair and recombination proteins [BR:
xve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BJD12_20445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
APP77201
UniProt:
F0BF55
LinkDB
All DBs
Position
complement(4679165..4682752)
Genome browser
AA seq
1195 aa
AA seq
DB search
MSTSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVMIATPDMTPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAIHPEWLQAGHANLFALAGRDSLAGRLFSEGRADLAEQQLADWQRVFGDGLHL
ELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEARVCISSGRVLDDP
KRPRDYSDQQYLKSSEEMAALFADIPDAIDNTQALAQRCNIEMRLGTYFLPAYPVPEDET
LDSWIRSQSREGLAARLEKSPIAPGKTRKDYVDRLEFELDTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIPNILGIT
LKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVIAPEPLS
EFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINVRHARA
GIDPVDITTIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQEQVMQMAQIVGDYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVKPPRVNESAYMFEA
ASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTRVGTAKLNRRTLEAMINA
GAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSAPAMRLDLPESKEWP
LGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKILASQQRGGGGGDGEKRAW
RPEVSAILAGQVIGVRRKGDSQVFVQLEDGRGRVECSAFSDAMAEFGHLLTRDRILIVKG
GLREDEFNGGYSLRIRQCWDYEQICADHAQRLSLRLDLREKQAFKRIDALLAKHRPGKTP
LRLDLLLRAQSGGVAGMLDLNGSHSVRIDQQLMDSLRADPAVRTVKIKYSPPWAQ
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttcacgtttcgtccatctgcacgtccacaccgagttctcgttggcggattcc
actatccgcgtgcccgagaaaccggatcaggctgacccgaagaaggccaaacaggccaat
ctgctcagccgcgcggtcgagctcgacatgcccgcgctggcggtcaccgacctcaacaac
ctgttcgcgctggtcaagttctacaaggccgccgaaggcgtgggcatcaagccgatcgcc
ggggccgacgtgatgatcgccaccccggacatgacgccctggcgcatgaccttgctgtgc
cgcgaccgcgaaggctacctgagcctgtcgcggctgctgacgcgcgcctggatggaaggc
caccgccccgaaggcggcgtggcgatccacccggaatggctgcaggccggccacgccaac
ctgtttgcgctggccggccgcgacagcctggccgggcgcctgttttccgagggccgtgcc
gacctggcggagcagcagttggccgattggcagcgcgtgttcggcgatgggctgcatctg
gagctgacccgcaccggccgcgagggcgaggaacgcttcaaccagttcgccctgcatgcc
gccggcgtgcgcgggctgccggtggtggccagcaacgacgtgcgcttcctgtacgccagc
gacttcaacgcgcacgaagcgcgcgtgtgcatctcctccggccgcgtgctggacgacccc
aagcgcccgcgcgactacagcgaccagcagtacctgaaatccagcgaggagatggccgcg
ctgttcgccgacatccccgacgcgatcgacaacacgcaggcgctggcgcagcgctgcaac
atcgagatgcgcctgggcacctacttcctgcccgcctacccggtgcccgaagacgagacg
ctggacagctggatccgcagccagtcgcgcgagggtctggccgcgcgcctggaaaaaagc
ccgatcgcgcccggcaagacccgcaaggactatgtcgaccggctggagttcgagctggac
accatcatcaagatggggtttccgggttatttcctgatcgtggccgacttcatccagtgg
ggaaagaaccagggcattccgatcggcccgggccgcggttccggcgccggttcgctggtg
gcctgggcgctgcagatcaccgacctggacccgttgccgtacaacctgctgttcgagcgc
ttcctgaatccagagcgcgtgtcgatgcccgacttcgacatcgacttctgcatggatcgc
cgcgacgaagtcatcgactacgtggcgcgcaagtacgggcgtgagcgcgtcagccagatc
atcacctacggcaccatggcggccaaggcggtggtgcgcgacgccgggcgcgtgctcggc
ttcacgtacgggctggtcgacagcgtcgccaagctgatccccaacatcctgggcatcacg
ctcaaggatgcgatgggcgaaggcaaggattcggagatggcgtcgccggatctgatccag
cgctatcaggtcgaagacgacgtgcgcgacctgatggacctggcgcgccagctcgaagac
ctcacccgcaatgccggcaagcatgccggcggcgtggtgatcgcgcccgagccgctctcc
gagttctgcccgctgttcgccgaacacgacgaggacgggcgcggcaagaatccggtcacc
cagttcgacaaggacgacgtcgaagcggtgggcctggtgaagttcgacttcctcggcctg
cgcacgctgaccatcatcgattgggcggtcaaggcgatcaacgtgcgccacgcgcgcgcc
ggcatcgacccggtcgacatcaccaccattccgctcgacgacgtgcccacctacaagggc
gtgttcgcctcgggcaataccggcgcggtgttccagttcgaatcctcgggcatgcgccgc
ctgctcaaggacgcgcgcccggaccgcttcgaagacctgatcgcgctggtgtcgctgtac
cgccccggcccgatggatctgatcccggacttcaacgcgcgcaagcacggccagcaggag
atcgtgtacccggatccgcgcaccgaagtcatcctgaaagacacctacggcatcatggtg
tatcaggagcaggtgatgcagatggcgcagatcgtcggcgattattcgctgggcggcgcc
gacctgctgcggcgtgcgatgggcaagaaggtgccggccgaaatggccaagcaccgcgaa
atcttccgcgagggtgcggccaagggcggggtgagcgcggccaaggccgacgaaatcttc
gatttgatggagaagttcgccggctacggtttcaacaagtcgcacgccgccgcctacgcg
ctggtcagctaccagaccgcctggctgaaacggcattacccggccgaattcatggccgcg
acgctgtcgtcggacatggacaacaccgacaaggtggtcggctttctcgatgaagtgcgc
aacctcggcctcaccgtcaaaccgccgcgcgtcaacgaatcggcctacatgttcgaggcc
gccagcccggacaccattcaatacggcctgggcgcgatcaagggcgtcggccagggcgcc
tgcgaggccatcgtcgaagaacgccagcgcggcggcccctacaccacgctgctggatttc
tgcacgcgcgtgggcaccgccaagctcaaccggcgcacgctggaagcgatgatcaatgcc
ggcgcgatggacggcctgggcaagaaccgcgcctcgctgatgctgcagttgcccgaggtg
atgaaggccaccgagcagatggcgcgcgagcgtgcctcggggcagaactcgctattcggc
ggcccggacccgagcgctccggcgatgcgattggacctgcccgagagcaaggaatggccg
ttggggcagctgctcaccggcgagcgcgaaacgctgggcttctacctcagcggccatccg
ttcgacccgcatcgcgaggaagtgcgcgagctggtcggctgcgacctgggcgcgctggaa
aagatcctggcctcgcaacaacgcggcggcggcggtggcgacggcgaaaaacgcgcctgg
cgcccggaagtcagcgcgatcctggcgggccaggtgatcggtgtgcgccgcaagggcgac
agccaggtgttcgtgcagctcgaagacggtcgcgggcgggtggaatgcagcgcgttctcc
gatgcgatggccgaattcggccacctgctcacccgcgaccgcatcctgatcgtcaagggc
ggcctgcgcgaggacgaattcaacggcggctacagcctgcgcatccgccagtgctgggat
tacgagcagatctgcgccgaccacgcgcagcggctgtcgctgcgcctggacctgcgcgag
aaacaggctttcaagcgcatcgatgccctgctggccaagcaccgccccggcaagacgccg
ctgcgcctggatctgctgctgcgcgcgcaaagcggcggcgtcgccggcatgctcgacctc
aacggtagccactcggtgcgcatcgaccagcagctgatggacagcctgcgcgccgacccg
gcggtgcggacggtgaagatcaagtacagcccgccgtgggcgcagtga
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