Xanthomonas vesicatoria: BJD12_21165
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Entry
BJD12_21165 CDS
T04741
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
xve
Xanthomonas vesicatoria
Pathway
xve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJD12_21165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xve03019
]
BJD12_21165
03016 Transfer RNA biogenesis [BR:
xve03016
]
BJD12_21165
Enzymes [BR:
xve01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BJD12_21165
Messenger RNA biogenesis [BR:
xve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BJD12_21165
Transfer RNA biogenesis [BR:
xve03016
]
Prokaryotic type
tRNA degradation factors
BJD12_21165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_20
HTH_11
HTH_IclR
RNase_II_C_S1
HTH_24
Motif
Other DBs
NCBI-ProteinID:
APP77317
LinkDB
All DBs
Position
4846764..4849289
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AA seq
841 aa
AA seq
DB search
MTKKNNPDSDRPSRRKSASPGESTTAEQQKLPGWMPDFLVRAAAGASTKSANKRAAAKAS
SDQPAPPAEPAAPRAPHPRKSGPPAPPPERFQKEAVQAVVDAGFKDPHADREALRYAEPI
ASREAILQLLEACDGPQTAEEIAEQLGLSDRIDALGKRLAAMVREAQLVQNRRGGYAPVQ
QTSLIAGVVIANPEGFGFLKPDEGGDDLFLPPFEMRKVMHGDRALANVTGIDRRGRREGA
IARVLERRMSRMIGRFFYEHGVAYVDPDDKRVQRNVQIAPDGIGEAREGQLVVCELIAPP
DARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFPQEVLDEAAAVPLVVEPQMIGGR
VDLRQMPLVTIDGEDAKDFDDAVYCEPNADGFRLVVAIADVSNYVRPGTPLDDEAQKRAT
SVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQVGRDGEVTGSRFYEAVMNSHARL
TYNQVWKAVGEDDADTKAFIGPLLPQVQRLHQLYNVLSKARTHRGAIEFETSEVRFVLDN
TGEVTQAGMLVRNDAHKLIEECMIAANVEAARYLLSVHVPAPYRVHERPPESKYEDLLEF
LKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAALLESVLLRSQSLAVYSPDNNGHFGLAL
EAYAHFTSPIRRYPDLLVHRAIKHALTGASPEKYIYTPRQMAALSLQCSERGRRADEAER
EVDERYRAAWMEKHVGGQFDGVISGVTGFGLFVELTQSKVNGLVHVTQLPQDYYQFDPIR
KTLSGERRGREFRLGDPVRVLVLKASMEERKIDFRLAEDGAPAEAPLPPREKPAKRKKKS
Y
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaaaaacaaccccgattccgaccggcccagccgccgcaaatccgccagccca
ggcgagtccaccaccgccgagcagcagaaactgccgggctggatgccggacttcctggtc
cgcgccgcggcaggtgcgtctaccaaatccgccaacaagcgcgccgcggcaaaagcctcg
tccgatcagcctgcgcctccggccgagcctgctgcgccgcgcgcgccgcatccacgcaag
agtggcccgcctgcgccaccaccggaacgtttccagaaagaagccgtccaggctgtcgtc
gacgccggattcaaggacccccatgccgaccgcgaggcgctgcgttatgccgagccgatc
gccagccgcgaggccatcctgcagctgctggaagcctgcgacggcccgcagaccgccgaa
gagatcgccgagcagctcggcttgagcgaccgcatcgacgcgctgggcaagcgcctggcc
gcgatggtgcgcgaagcgcagctggtgcagaaccgccgtggcggctatgcgccggtgcag
cagaccagcctgatcgctggcgtggtgatcgccaacccggaaggcttcggtttcctcaag
cccgatgaaggtggcgacgacctgttcctgccgccgttcgaaatgcgcaaggtgatgcac
ggcgaccgtgcattggccaacgtgaccggcatcgaccgccgtggccgccgcgaaggcgcc
attgcgcgcgtgctggaacgacgcatgtcgcgcatgatcgggcgcttcttctacgagcac
ggtgtggcctacgtcgacccggacgacaagcgcgtgcaacgcaacgtgcagatcgccccg
gacggcattggcgaggcgcgcgaaggccagctggtggtgtgcgaactgatcgcaccgccg
gatgcgcgccgcccggccatcggcaagatcatcgcggtgttgggcgacaagctgaccccg
tcgctggtggtggaaatggccatccacggccacgaactgccgcacgaatttccgcaggaa
gtgctggacgaagccgccgccgtgccgttggtggtcgagccgcagatgatcggtgggcgt
gtggacctgcggcagatgccgctggtcaccatcgatggcgaggacgccaaggatttcgac
gatgcggtgtattgcgaacccaatgccgacggtttccgtctggtggtggcgatcgccgac
gtgtccaactatgtgcgccccggcacgccgctggacgacgaagcgcagaagcgcgccacc
tcggtgtatttccccgggtttgtggtgccgatgctgccggagaccttgtccaacggcatc
tgctcgctgatgcccaaggtcgaccgcatgtgtttcgtctgcgacatgcaggtgggacgc
gatggcgaagtgaccggctcgcgtttctacgaggcggtaatgaactcgcacgcgcgcctg
acctacaaccaggtctggaaggcggttggcgaagacgatgccgataccaaggcgtttatc
ggcccgttgttgccgcaggtgcagcgtctgcatcagctgtacaacgtattgtcgaaggcg
cgcacgcatcgcggtgcgatcgaattcgaaacctccgaagtgcgcttcgtgctcgacaat
accggcgaggtcacccaggccggtatgctggtgcgcaacgatgcgcacaagctgatcgaa
gaatgcatgatcgccgccaacgtggaagcggcgcgttatctgctgagcgtgcatgtgccc
gcaccgtaccgcgtgcacgagcgcccgccggagagcaagtacgaagacctgctggaattc
ctcaaggaattccagctcagcctgccggcgtggagcaaggtgcgcccgggcgattacacc
aagctgttgaagaaggtgcgcgcgcgcccggatgcggcgctgctggaatcggtgctgctg
cgcagccagagcctggcggtgtattcgcccgacaacaacggccacttcggtctggcgctg
gaggcgtatgcgcacttcacctcgccgattcgccgctacccggatctgctggtgcatcgc
gcgatcaagcacgcgctgaccggtgccagcccggaaaaatacatctacacaccgcggcag
atggcggcgctgtcgctgcaatgctccgagcgtggacgccgtgccgatgaggccgagcgc
gaagtggacgagcgttatcgcgccgcctggatggaaaagcatgtcggcggccagttcgat
ggcgtcatcagcggcgtgaccggcttcggcctgttcgtggaattgacccagtccaaggtc
aacggcctggtgcatgtcacccagttgccgcaggactattaccagttcgacccgatccgc
aaaacgctcagcggcgagcgccgtggccgtgagttccgcctaggcgacccggtgcgcgtg
ctggtgctcaaggccagcatggaggagcgcaagatcgacttccgtctggcagaggatggt
gcgcctgcagaggcacctctaccgccgcgtgagaagccggccaagcgcaagaaaaagtcg
tattga
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