Xylanimonas protaetiae: ET471_08530
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Entry
ET471_08530 CDS
T05815
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
xya
Xylanimonas protaetiae
Pathway
xya03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xya00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ET471_08530 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xya03021
]
ET471_08530 (rpoB)
03400 DNA repair and recombination proteins [BR:
xya03400
]
ET471_08530 (rpoB)
Enzymes [BR:
xya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ET471_08530 (rpoB)
Transcription machinery [BR:
xya03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ET471_08530 (rpoB)
DNA repair and recombination proteins [BR:
xya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ET471_08530 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
CDC48_N
DUF8659
Motif
Other DBs
NCBI-ProteinID:
QAY70075
UniProt:
A0A4P6F466
LinkDB
All DBs
Position
1849681..1853181
Genome browser
AA seq
1166 aa
AA seq
DB search
MAASRTPSAPSADAIANRTASRRLSFAKIYEPLEVPDLLGLQTESFDWLLGNEAWQARVA
AASSAVPATSGLEEIFEEISPIEDFGQSMSLSFSNHRFEPSKYSPEECKEKDFTYAAPLF
VTAEFVNYTTGEIKSQTVFMGDFPLMTPRGTFIINGTERVVVSQLVRSPGVYFERTPDKT
SDKDIFTSKIIPSRGAWLEFEIDKRDAVGVRVDRKRKQSVTVLLKALGMTESEIREEFAQ
FPAVLDTLEKDHVHTEDEALVDLYRKIRPGEPPTVEAGRALLENFYFNPKRYDLAKVGRY
KVSKKLGIEAPLTDSTLTRADIVATIKYLAALHADVATLDGTRDGQPVEVRVETDDIDHF
GNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIREFFGT
SQLSQFMDQNNPLAGLTHKRRLNALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLASFGRINPFGFIETPYRKVEGGQVTDQIDYLTADDEDRYVIAQANTPLTVDGH
FQEPRVLVRVKGGETSDVPVGEVDYIDVSPRQMVSVATALIPFLEHDDANRALMGANMQR
QAVPLVRSEMPLVGTGMERRAAVDAGDVVLATKAGVVTEVSADLVLVANDDATTSSYRIS
KFVRSNQGTSYNQRVVVDEGQRVEPGSVLADGPATDEGELALGRNLLVAFMSWEGHNYED
AIILSQRLIEDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEDVLADLDERGIIRIG
AEVGAGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEQGTVIGVREF
NREDGDELPAGVNQLVRVYIAQRRKITVGDKLAGRHGNKGVISKILPQEDMPFLPDGTPV
DVVLNPLGVPGRMNVGQVLETHLGWVASRGWDTDLAEDQKAEWLSHVPDVAKKSAPFSPV
ATPVFDGLEEQALRGLLSTTLPNRDGDRMVGEDGKAHLFDGRSGEPFPDPVSVGYMYILK
LHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTIK
SDDVPGRVKVYEAIVKGENIPDSGIPESFKVLLKEMQSLCLNVEVLSSDGSSIEMKESDD
EVYRAAEELGIDLSRRPNAASSIDEI
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcctcgcgcaccccttctgctccctccgccgacgcgatcgcaaaccgcaccgcc
tctcgccgcctctccttcgccaagatctacgagcccctcgaggtccctgaccttctcggc
ctgcagaccgagagcttcgactggctgctggggaacgaggcctggcaggcccgcgtggcc
gccgcctcgtccgcggtgcccgcgacgtccggcctcgaggagatcttcgaagagatctcc
cccatcgaggacttcggtcagtcgatgtcgctctccttctcgaaccaccgcttcgagccg
tcgaagtactcgccggaggagtgcaaggagaaggacttcacctacgccgctccgctgttc
gtcaccgcggagttcgtgaactacacgacgggtgagatcaagtcgcagacggtcttcatg
ggcgacttcccgctcatgacccctcgcggcacattcatcatcaacggcaccgagcgcgtc
gtcgtctcgcagctcgtccgctccccgggcgtgtacttcgagcgcacccccgacaagacg
tcggacaaggacatcttcacgtcgaagatcatcccgtcgcgcggcgcctggctcgagttc
gagatcgacaagcgcgacgccgtcggcgtgcgcgtcgaccgcaagcgcaagcagtccgtc
acggtgctgctcaaggctctcggcatgaccgagtcggagatccgcgaggagttcgcgcag
ttcccggccgtcctcgacaccctcgagaaggaccacgtccacaccgaggacgaggccctg
gtcgacctgtaccgcaagatccgcccgggcgagccgcccacggtcgaggccggccgcgcg
ctgctcgagaacttctacttcaacccgaagcgctacgacctcgcgaaggtcggccgctac
aaggtgtcgaagaagctcggcatcgaggccccgctgacggactcgacgctgacccgcgcc
gacatcgtcgcgacgatcaagtacctcgccgcgctgcacgccgacgtcgccaccctggac
ggcacgcgcgacggccagcccgtcgaggtgcgcgtcgagaccgacgacatcgaccacttc
ggcaaccgccgcatccgcgccgtcggcgagctcatccagaaccaggtgcgcacgggcctg
tcccgcatggagcgcgtggtccgcgagcgcatgacgacgcaggacgtcgaggccatcacg
ccgcagacgctgatcaacatccgccccgtggtggcgtcgatccgcgagttcttcggtacc
tcgcagctgtcgcagttcatggaccagaacaacccgctcgcgggcctgacgcacaagcgt
cgcctgaacgcgctcggcccgggtggtctgtcgcgcgaccgcgccggcatggaggtccgt
gacgtccacccgtcgcactacggccgcatgtgcccgatcgagacccctgagggcccgaac
atcggtctgatcggctcgctcgcgtccttcggtcgcatcaacccgttcggcttcatcgag
acgccgtaccgcaaggtcgagggcggtcaggtcaccgaccagatcgactacctgacggcc
gacgacgaggaccgctacgtcatcgcccaggcgaacacgccgctgacggtcgacgggcac
ttccaggagccccgcgtcctggtgcgcgtcaagggcggcgagacgtccgacgtgccggtg
ggcgaggtcgactacatcgacgtctccccgcgccagatggtgtcggtcgcgaccgcgctc
atcccgttcctcgagcacgacgacgcgaaccgcgccctcatgggtgccaacatgcagcgc
caggccgtgccgctggtccgctccgagatgccgctcgtcggcaccggcatggagcgccgc
gcggccgtcgacgccggcgacgtcgtcctggccaccaaggccggcgtcgtcaccgaggtg
tcggccgacctggtgctcgtcgcgaacgacgacgcgaccacgtcctcgtaccgcatctcg
aagttcgtgcgctccaaccagggcacgtcctacaaccagcgcgtggtcgtggacgagggc
cagcgcgtcgagccgggctcggtcctggccgacggccccgcgacggacgagggcgagctc
gcgctcggccgcaacctgctcgtggcgttcatgtcgtgggagggccacaactacgaggac
gcgatcatcctgtcgcagcgcctcatcgaggacgacgtcctctcctcgatccacatcgag
gagcacgaggtcgacgcccgcgacacgaagctgggcccggaggagatcacgcgggacatc
ccgaacgtctccgaggacgtcctggcggacctcgacgagcgcggcatcatccgcatcggt
gccgaggtcggcgccggcgacgtgctggtcggcaaggtcaccccgaagggcgagaccgag
ctgaccccggaggagcgcctgctgcgcgccatcttcggcgagaaggcccgcgaggtgcgc
gacacgtccctcaaggtgccccacggcgagcagggcaccgtcatcggcgtccgcgagttc
aaccgcgaggacggcgacgagctgcccgccggcgtgaaccagctggtccgcgtgtacatc
gcccagcgccgcaagatcacggtgggcgacaagctcgccggccgtcacggcaacaagggc
gtcatctcgaagatcctgccgcaggaggacatgccgttcctccccgacggcacgcccgtc
gacgtcgtgctcaacccgctcggtgtccccggtcgtatgaacgtcggccaggtgctcgag
acgcacctcggctgggtcgccagccgcggctgggacaccgacctggcggaggaccagaag
gccgagtggctctcgcacgtgccggacgtcgccaagaagtcggcgccgttcagcccggtc
gccaccccggtgttcgacggcctcgaggagcaggccctgcgcggcctgctgtcgacgacg
ctcccgaaccgcgacggcgaccgcatggtcggcgaggacggcaaggcgcacctgttcgac
ggccgctccggcgagccgttcccggacccggtgtcggtcggctacatgtacatcctcaag
ctgcaccacctggtcgacgacaagatccacgcccgctcgaccggcccgtactcgatgatc
acgcagcagccgctgggcggtaaggcccagttcggcggccagcgcttcggcgagatggag
gtgtgggccctggaggcgtacggcgccgcctacacgctgcaggagctcctcaccatcaag
tcggacgacgtcccgggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatc
cccgactcgggtatcccggagtccttcaaggtgctcctcaaggagatgcagtcgctctgc
ctgaacgtggaggtcctgtcctcggacggctcctccatcgagatgaaggagagcgacgac
gaggtgtaccgcgccgcggaggagctcggcatcgacctctcccgccggccgaacgctgcc
agcagcatcgacgagatctga
DBGET
integrated database retrieval system
