Xylanimonas protaetiae: ET471_16120
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Entry
ET471_16120 CDS
T05815
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
xya
Xylanimonas protaetiae
Pathway
xya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ET471_16120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xya03019
]
ET471_16120
03400 DNA repair and recombination proteins [BR:
xya03400
]
ET471_16120
Enzymes [BR:
xya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ET471_16120
Messenger RNA biogenesis [BR:
xya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ET471_16120
DNA repair and recombination proteins [BR:
xya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ET471_16120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Umbravirus_LDM
Motif
Other DBs
NCBI-ProteinID:
QAY71368
UniProt:
A0A4P6FL53
LinkDB
All DBs
Position
complement(3462052..3463983)
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AA seq
643 aa
AA seq
DB search
MTTQTTSPALDVLRRVFGYDAFRGEQAAIIDTVVGGGDALVLMPTGGGKSLCYQIPALVR
EGTGVVVSPLIALMQDQVDALAALGVRAAFLNSTLTSDERRAVERALVAGELDLLYLAPE
GLRSRATLDLLDRATIALFAIDEAHCVSQWGHDFRPDYLELSMLHERWPAVPRIALTATA
TAATRAEIAHRLDLEGARHFVSSFDRPNITYRIVPKDRPEKQLLDLLRTEHGHAEHGHAE
HGHADHKDVGGRGDAGIVYCLSRASVEKTAAMLVANGIEALPYHAGLPASVRAANQARFL
REDGVVMVATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWLAYGLA
DVVQQRKLIETSDGDAAHRRNLGMHLNAMLALCETVECRRAQLLAYFGQTLAERCGNCDT
CTAPPEAWDGTIAAQKVLSTVLRLAREKGQSFGVGQVVDILLGRDTEKVRRFGHHELSVF
GVGTDLAEPEWRAVVRQLLAQGLLTVEGVHGTLVLTEASGEVLARRREVRMRHEPVRPVR
AAKARKAAVAEDLPAAGAALFEALRAWRAGEAKAQGKPAYIVFGDATLRGIAASRPGTLE
ALARVSGVGENKLERYGEAVLAVVADQGTDAPPDDGDVLFADG
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
gtgacgacccagacgaccagccccgcgctcgacgtgctgcggcgcgtcttcgggtacgac
gcgttccgcggcgagcaggcggcgatcatcgacaccgtcgtcggcggcggcgacgcgctc
gtcctcatgcccacgggcggcggcaagtcgctgtgctaccagatccccgcgctcgtgcgg
gaggggacgggcgtcgtcgtctcgccgctcatcgcgctcatgcaggaccaggtcgacgcg
ctcgcggcgctcggggtgcgggcggcgttcctcaactcgacgctcacgtccgacgagcgg
cgcgccgtcgagcgggccctcgtggccggcgagctcgacctgctctacctggcccccgag
ggcctgcgcagccgcgcgacgctcgacctgctggaccgggcgacgatcgccctgttcgcg
atcgacgaggcccactgcgtctcccagtggggccacgacttccggcccgactacctcgag
ctgtcgatgctccacgagcgctggcccgcggtgccccgcatcgcgctgaccgcgacggcg
acggccgcgacgcgcgcggagatcgcccaccgcctggacctcgagggcgcccggcacttc
gtctccagcttcgaccggcccaacatcacctaccggatcgtccccaaggaccggccggag
aagcagctgctcgacctgctgcgcaccgagcacggccacgccgagcacgggcacgccgag
cacgggcacgcggaccacaaggacgtgggcggccgcggcgacgccggcatcgtctactgc
ctctcgcgcgcgtccgtcgagaagacggcggccatgctcgtcgcgaacgggatcgaggcc
ctgccgtaccacgcgggcctgccggcctccgtgcgggcggcgaaccaggcgcggttcctg
cgcgaggacggcgtcgtgatggtcgcgaccatcgcgttcggcatgggcatcgacaagccc
gacgtgcgcttcgtcgcgcacctcgacctgcccaagtcggtcgaggggtactaccaggag
acgggccgcgcgggccgcgacgggctcccgtcgacggcgtggctcgcgtacgggctcgcc
gacgtcgtgcagcagcgcaagctcatcgagacgtccgacggcgacgccgcgcaccggcgc
aacctcgggatgcacctcaacgccatgctggccctgtgcgagacggtcgagtgccgccgc
gcgcagctgctcgcgtacttcgggcagaccctggcggagcggtgcggcaactgcgacacg
tgcacggccccgccggaggcgtgggacggcacgatcgccgcgcagaaggtgctctccacg
gtgctgcgcctcgcgcgcgagaaggggcagagcttcggcgtcgggcaggtggtggacatc
ctgctcggccgggacaccgagaaggtccgccggttcgggcaccacgagctgtccgtgttc
ggcgtgggcaccgacctggcggagcccgagtggcgtgccgtggtgcgccagctgctcgcc
cagggcctcctgacggtcgagggcgtgcacggcacgctcgtgctcacggaggcgtcgggg
gaggtgctcgcgcggcgtcgcgaggtgcgcatgcggcacgagcccgtccgcccggtccgc
gccgccaaggcgcggaaggccgcggtcgccgaggacctccccgcggccggtgccgcgctc
ttcgaggcgctgcgcgcgtggcgggcgggagaggccaaggcgcagggcaagcccgcgtac
atcgtcttcggcgacgcgacgctccgcggcatcgcggcgtcccggccgggcacgctcgag
gcgctcgcgcgggtcagcggcgtcggcgagaacaagctggagcggtacggcgaggccgtg
ctcgccgtcgtggccgaccaggggacggacgcgccgccggacgacggtgacgtgctgttc
gccgacggctag
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