Xylanimonas protaetiae: ET471_17200
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Entry
ET471_17200 CDS
T05815
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xya
Xylanimonas protaetiae
Pathway
xya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ET471_17200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xya03019
]
ET471_17200
03009 Ribosome biogenesis [BR:
xya03009
]
ET471_17200
Enzymes [BR:
xya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ET471_17200
Messenger RNA biogenesis [BR:
xya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ET471_17200
Ribosome biogenesis [BR:
xya03009
]
Prokaryotic type
rRNA processing factors
ET471_17200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
DUF5351
Motif
Other DBs
NCBI-ProteinID:
QAY71551
UniProt:
A0A4V0YGK7
LinkDB
All DBs
Position
complement(3703390..3706536)
Genome browser
AA seq
1048 aa
AA seq
DB search
MTSENNEAPRKPARRRVTRAAGGPAAGATPDLGITLPARDEAPAPAPAAAAPAPEAPAAD
APKAEAPARRSRRVSRPTSTPTTAPDAAPDAAAAPAAGISLDDIVFPARADEPAAEAPRT
QVSVGRSEAAGARRAVRSLADIELPNGPAAPAADAGADDAEPAAPRKSIRSRRTKATAED
APATASKATASKAATSKAASSKAAGTRSAAKAAPKASAPAADAEGVAPEAAAPARATRTR
RARAEQPEQPVVAAEPKPAVAEPPADSAATASRAPGSSTPRLATTAMLFQAPDLAAGRRP
RRAQAPAGPPTARPEPKAQAGELAAAPATKAVAETTAEAAAAEPATETATPVVVLPEPVE
LTGEEAAAAEEVAAIEAELVADGVELVDLGPEDLVEDEEDVELDTADDRPRRRRRRGGRG
RRGGRRPEDDEDEEGDELAEPSDEAQDADADEEGEEPAEDDADETEHPEDGGRASSRRRR
RRRGSRAERAESATARGRSSDEVTALKGSTRLEAKRQRRREGRDAGRRRQIITEAEFLAR
REAVSRSMVVRELGGRTQIAVLEDGVLVEHYVSQQSQTSMVGNVYLGRVQNVLPSMEAAF
VDVGKGRNAVLYAGEVNWDAAGLEGGQPRRIEQALKSGDSVLVQVTKDPIGHKGARLTSQ
VTLAGRYLVLVPGGGMTGISRKLPDVERNRLKKILREVVPEGAGVIVRTAAEGASEEELR
ADVERLQSQWDAIQTKAGRSSTSAPALLQGEPDLAIRVVRDIFNDDFSSLVVEGDGAWQE
VSTYVEELAPDLRERVTKWNETTDVFAVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAMT
VVDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLV
LRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCKGRGFIVHAEPI
EKGGSSNGNGHTHAEPAADAAPAGEPKRSSRRRRATSKPAEATPHADVPKLPDDKSEARE
AVKATLATIAAAAAHAHDHKDDAATPDA
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
gtgacctctgagaacaacgaagcaccccgtaagcccgcgcgccgccgcgtgacccgcgcc
gccggcggcccggccgccggcgccacgcccgacctcggcatcaccctcccggcgcgcgac
gaggccccggcgcccgcgccggccgccgcggcccccgccccggaggccccggccgcggac
gcgccgaaggcggaggcccccgcgcgccgctcccgccgcgtctcgcgccccacctcgacg
ccgacgacggcgcccgacgccgccccggacgccgcggccgcgcccgccgccgggatctcg
ctcgacgacatcgtcttccccgcccgggccgacgagccggctgccgaggcgccgcgcacg
caggtctccgtcggccgctcggaggccgccggcgcccgccgcgccgtccgcagcctcgcc
gacatcgagctgccgaacggtccggccgcccctgcggccgacgccggcgccgacgacgcc
gagcccgccgccccgcgcaagagcatccgctcgcgccgcacgaaggccaccgccgaggac
gcgcccgccacggcgtcgaaggccacggcgtcgaaggccgccacgtccaaggcggcgtcg
tcgaaggcagcgggcacccggtcggctgcgaaggcggccccgaaggcgtccgccccggcg
gcggacgctgaaggcgtcgcgcccgaggccgccgcgcccgcccgcgccacccggacccgc
cgcgcccgcgccgagcagccggagcagcccgtcgtggccgccgagcccaagcccgccgtc
gccgagccgcccgccgactcggccgcgacggcctcccgggccccgggctcgtcgacgccg
cgcctggccaccaccgcgatgctcttccaggcccccgacctggcggccgggcgccgcccg
cgccgcgcgcaggcccccgccggcccgccgaccgccaggcccgagccgaaggctcaggcc
ggcgagctcgccgcggcgcccgccaccaaggccgtcgccgagaccactgccgaggccgct
gccgccgagcccgccaccgagacggcgacccccgtcgtcgtgctgcccgagcccgtcgag
ctgaccggcgaggaggcggccgccgccgaggaggtcgccgccatcgaggccgagctggtc
gccgacggcgtcgagctcgtggacctgggtccggaggacctcgtcgaggacgaggaggac
gtcgagctcgacacggccgacgaccgcccgcgtcgtcgtcgtcgccggggtggccgtggc
cgccgcggtggccgtcgtcccgaggacgacgaggacgaggagggcgacgagctcgccgag
ccgtcggacgaggcgcaggacgccgacgccgacgaggagggcgaggagcccgccgaggac
gacgccgacgagacggagcaccccgaggacggcggccgcgcgtcgagccgtcgtcgtcgc
cgccggcggggctcgcgcgccgagcgcgcagagtccgcgaccgcgcgcggccgctcctcg
gacgaggtcacggcgctcaagggctccacgcgcctcgaggccaagcgccagcgccgccgc
gagggccgcgacgcgggccgccgccgtcagatcatcaccgaggccgagttcctcgcccgc
cgcgaggcggtgtcgcgctcgatggtggtgcgcgagctgggcggccgcacgcagatcgcc
gtgctcgaggacggcgtgctcgtcgagcactacgtctcgcagcagtcgcagacctcgatg
gtcggcaacgtgtacctgggccgcgtgcagaacgtgctgccgtccatggaggccgcgttc
gtcgacgtcggcaagggccgcaacgccgtgctgtacgccggtgaggtcaactgggacgcc
gccggtctcgagggcggccagccgcgccgcatcgagcaggcgctcaagtcgggcgactcg
gtgctggtgcaggtcaccaaggacccgatcggccacaagggtgcccgtctgacgtcgcag
gtcacgctcgcgggccgctacctcgtgctcgtccccggcggcggcatgaccggcatcagc
cgcaagctgcccgacgtcgagcgcaaccgcctcaagaagatcctgcgcgaggtcgtgccc
gagggcgccggcgtcatcgtgcgcacggccgccgagggggcctcggaggaggagctgcgc
gccgacgtcgagcgtctccagagccagtgggacgccatccagaccaaggccggccgctcc
tcgacgagcgccccggcgctgctccagggcgagcccgacctggccatccgcgtcgtccgc
gacatcttcaacgacgacttctcgtcgctcgtggtcgagggtgacggggcgtggcaggag
gtctcgacctacgtcgaggagctcgcgcccgacctgcgcgagcgcgtgaccaagtggaac
gagaccaccgacgtcttcgcggtgcaccgcgtcgacgagcagctcgccaagggcatggac
cgcaaggtctggctgccctcgggcggctccctcgtcatcgaccgcaccgaggccatgacg
gtcgtcgacgtcaacaccggcaagttcaccggcgcgggcggcacgctcgaggagaccgtg
acgcgcaacaacctggaggcagcggaggagatcgtccgccagctccggctgcgcgacatc
ggcggcatcatcgtcatcgacttcatcgacatggtgctcgagtcgaaccgcgacctggtg
ctgcgccgcctggtcgagtgcctgggccgcgaccgcaccaagcaccaggtcgccgaggtg
acgtcgctgggcctggtccagatgacgcgcaagcgcgtgggccagggcctggtcgaggcg
ttcagcgagacctgcgagcactgcaagggccgcgggttcatcgtgcacgccgagccgatc
gagaagggcgggtcgtcgaacggcaacgggcacacccacgccgagcccgccgccgacgcc
gcgcccgcgggggagccgaagcgctcgtcacgccgtcgtcgtgcgacgtcgaagccggcc
gaggccaccccgcacgccgacgtgccgaagctgccggacgacaagtccgaggcgcgcgag
gccgtcaaggccacgctcgccacgatcgcggccgcggccgcgcacgcgcacgaccacaag
gacgacgccgcgacgcctgacgcctga
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