Xylophilus sp. GOD-11R: R9X41_00260
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Entry
R9X41_00260 CDS
T09600
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R9X41_00260 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xyg03019
]
R9X41_00260 (recQ)
03400 DNA repair and recombination proteins [BR:
xyg03400
]
R9X41_00260 (recQ)
Enzymes [BR:
xyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R9X41_00260 (recQ)
Messenger RNA biogenesis [BR:
xyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R9X41_00260 (recQ)
DNA repair and recombination proteins [BR:
xyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R9X41_00260 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
WPB57133
LinkDB
All DBs
Position
complement(56561..58444)
Genome browser
AA seq
627 aa
AA seq
DB search
MSSVLTAPDPTTADPLQILHDVFGYERFRGRQQDIVEHVCSGGDALVLMPTGGGKSLCYQ
IPAISRQRAGHGVSIVVSPLIALMHDQVGALHEAGVDAEFLNSTLDWNQTLDIERRMQRG
EITMIYVAPERLSTPRFLELLDGLRDTDRLALFAIDEAHCVSQWGHDFRPEYRGLSILHE
RYPGVPRIALTATADDLTRADIVERLELQDARQFVSSFDRPNIRYAIVEKKDPTQQLLRF
IEREHPDEAGVVYCQSRKRVEELAQSLCDAGLNALPYHAGLDAAVRQRHQDRFLREDGIV
MCATIAFGMGIDKPDVRFVAHVDMPKNIEGYYQETGRAGRDGQAADAWMAYGLQDVVNQR
RMIDESPAGEEFKQVMRGKLDALLALAEATDCRRVRLLGYFGEPSQPCGNCDNCLNPPDI
WDGTDAARKLLSTIYWIRKQQGIGFGAGQVMDIVRGKTSEKVVQHGHDKLSTFGLCADIS
EAQLRGVLRQLIATGALQVDAAAYNTLVLTDGSRAVLKGEVPVRLRLSLNTPTARAPRRE
RAGKTAPAAAALDAAGQTRFAALKSWRAEVAREHNLPAYVIFHDATLAAIAERAPNSLDD
LQGITGIGGKKLEAYGAEVLRVSLAAG
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttccgtcctcaccgcccccgatcccaccaccgccgatccgttgcagatcctgcac
gacgtcttcggctacgagcgcttccgcggccggcagcaggacatcgtcgagcacgtctgc
agcggcggcgacgcgctggtgctcatgcccaccggcggcggcaagtcgctctgctaccag
attccggccatctcccgccagcgcgccggccacggcgtgagcatcgtggtgtcgccgctg
atcgcgctgatgcacgaccaggtcggtgcgctgcacgaagccggggtcgacgccgaattc
ctgaactccacgctcgactggaaccagacgctcgacatcgaacgccgcatgcagcgcggc
gagatcacgatgatctacgtggcgcccgagcggctgtccaccccgcgctttctcgaactg
ctcgacggcctgcgcgataccgaccggctggcgctcttcgccatcgacgaggcgcattgc
gtcagccagtggggccatgatttccgtccggaataccgcggtctgtcgatcctgcacgag
cgctatcccggcgtgccgcgcatcgcgctcaccgccaccgccgacgacctgacccgcgcc
gacatcgtcgagcgcctcgaactgcaggacgcgcgccagttcgtcagcagtttcgaccgg
ccgaacatccgctacgccatcgtcgagaagaaagacccgactcagcagctgctgcgcttc
atcgagcgcgagcatcccgacgaggccggcgtggtctattgccagtcgcgcaagcgggtg
gaggaactcgcccagtcgctctgcgacgccggactgaacgccctgccctaccacgcgggc
ctggacgccgccgtgcgccaacgccaccaggaccggtttctgcgcgaagacggcatcgtg
atgtgcgccaccatcgccttcggcatgggcatcgacaaacccgacgtgcgcttcgtcgcc
cacgtcgacatgcccaagaacatcgagggctactaccaggaaaccggccgtgccggccgc
gatggccaggccgccgacgcctggatggcctacggcctgcaggacgtcgtcaatcagcgc
cgcatgatcgacgaaagccccgccggcgaagagttcaagcaggtcatgcgcggcaagctc
gacgccctgctggcgctggccgaagccaccgactgccggcgggtgcgactgctcggctac
ttcggcgagccgagccagccctgcggcaactgcgacaactgcctgaatccgcccgacatc
tgggacggcaccgacgccgcccgcaagctgctgtcgaccatctactggatccgcaagcag
cagggcatcggcttcggcgccggccaggtcatggacatcgtgcgcggcaagaccagcgag
aaagtggtgcagcacggccacgacaagctctccaccttcggcctttgcgccgacatctcc
gaggcgcagctgcgcggcgtgctgcgccagttgatcgccaccggtgccctgcaggtggac
gccgccgcctacaacaccctggtgctgaccgacgggtcgcgcgcggtgctcaagggcgag
gtgccggtgcgcctgcgactgtcgctcaacaccccgaccgcccgggcgccacgccgcgaa
cgcgcgggcaagaccgctccggccgccgccgcactcgacgccgccggacagacccggttc
gccgcactcaaatcgtggcgcgccgaggtcgcccgcgagcacaacctgccggcctacgtg
atcttccacgacgccaccctggcggccatcgccgaacgcgctccgaactcgctcgacgat
ttacagggcatcacgggcatcggcggcaagaagctcgaggcctacggcgccgaagtgctg
cgggtgtcgctggctgccggctga
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