Xylophilus sp. GOD-11R: R9X41_01165
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Entry
R9X41_01165 CDS
T09600
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R9X41_01165 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xyg03021
]
R9X41_01165 (rpoC)
03400 DNA repair and recombination proteins [BR:
xyg03400
]
R9X41_01165 (rpoC)
Enzymes [BR:
xyg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R9X41_01165 (rpoC)
Transcription machinery [BR:
xyg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R9X41_01165 (rpoC)
DNA repair and recombination proteins [BR:
xyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R9X41_01165 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WPB57292
LinkDB
All DBs
Position
244590..248813
Genome browser
AA seq
1407 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFGIMSEDDYDAKRKEYGDEFIAKM
GAEGIKDLLEAIDIDTEIERLRGDLTGSEVKVKKNAKRLKLLEAFKKSGIKPGWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPIM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNILFPASGEPSIVPSQDVVLGLYYATRDKVNGKGEGLVFSDIGEVQRAFDAGQA
ELAARISVRLTEWIKDKSTGEFTPSTTLTYTTVGRALLSEILPKGLPFSNLNKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAVDDMLVPPEKVGIIERAETEV
KEIAQQYSSGLVTAGERYNKVVDIWGKAGDEVSKVMMAQLAKEKTTDRNGNTVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEEDCGTHNGSLMRAIVEGGEVIESLRDRILG
RTAAEDVLHPENRSVLAAAGTLLEEDLIEELEAAGVDEVKVRTALTCETRFGICAKCYGR
DLGRGGLINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGVIGFN
ATMRYVSNTKGDLVVIARSGEIVIHDEHGRERERHKVPYGATLTVKADQTIKAGTILANW
DPLTRPIITEFAGQVRFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGSTKVVRPQVKLI
DAQGQEVKIPGTDHSVTIGFQVGSLVQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEMTGTVSFGKETKGKVRLQITDPEGKVWDELIPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENPGESGYIGGEQVERSEMLNTNDRLRGESKVPATYTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHNARKVKDEMDEAERTA
IAEAEAAEMSGDGLGDIAETSEGASAE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcactccggacgagcatttcgatgccatc
cgcatcggcctggcttcgcccgaaaagatccgttcgtggtctttcggcgaagtgaagaag
cccgagaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgtcgaagtgacgcagaccaaggttcgccgcgag
cgcatgggtcatatcgacctggccgctccctgcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctacgtggtgaccgaccccggcatgaccccgctgaagaagttcgggatcatg
tccgaggacgactacgacgccaagcgcaaggaatacggtgacgagttcatcgccaagatg
ggcgccgaaggcatcaaggacctgctcgaagccatcgacatcgacaccgagatcgaacgc
ctgcgtggcgacctgaccggctccgaagtcaaagtcaagaagaacgccaagcgcctgaag
ttgctcgaagcgttcaagaagtccggcatcaagccgggctggatggtgctcgacgtgctg
ccggtgctgccgccggacctgcgtccgctggtgcccctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtatcgccgcgtcatcaaccgcaactcgcgtctgcgccgcctg
ctggagctgaaggctccggaaatcatcgcgcgcaacgagaagcgcatgctgcaggaagcc
gtcgactcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcgc
gcgctgaagtccctggccgacatgatcaagggcaagtccggtcgcttccgccagaacctg
ctgggcaagcgcgtcgactactccggtcgttcggtgatcaccgtgggcccgacgctcaag
ctgcatcagtgcggcctgcccaagctgatggccctggaactcttcaagcctttcatcttc
tcgcgcctcgaagccatgggcatcgcgacgacgatcaaggccgccaagaaggaagtcgaa
tccggcacgccggtggtgtgggacatcctggaagaggtcatcaaggaacacccgatcatg
ctcaaccgtgcgcctacgctgcaccggctgggcatccaggcgttcgagccgatcctgatc
gaaggcaaggcgatccagctgcacccgctggtctgcgcggctttcaacgccgacttcgac
ggcgaccagatggccgttcacgtgccgctgtcggtcgaggcgcagatggaagcccgcacg
ctgatgctggcctccaacaacatcctgttccccgcttccggcgagccgtccatcgtgccg
tcgcaagacgtggtgctgggcctctactacgccacccgcgacaaggtcaacggcaagggc
gaaggcctggtcttctccgacatcggtgaagtccagcgtgcgttcgacgccggccaggcc
gagctggccgcgcgcatcagcgtgcgcctgaccgagtggatcaaggacaagtcgaccggc
gaattcacgccttcgaccaccctgacctacaccacggtcggccgtgcgctgctctccgag
atcctgcccaagggccttcccttctccaacctgaacaaggcgctgaagaagaaggagatc
tccaagctgatcaacgtgtccttccgcaagtgcgggctcaaggaaacggtcgtcttcgcc
gacaagctgctgcagaacggtttccgcctggcgaccaaggccggcatctcgatcgcggtg
gacgacatgctggtgccgccggagaaggtcggcatcatcgagcgcgccgagaccgaggtg
aaggaaatcgcccagcagtactcctccggtctggtgaccgcgggcgagcgctacaacaag
gtggtggacatctggggcaaggccggcgacgaagtctccaaggtcatgatggcccagctg
gccaaggaaaagacgaccgatcgcaacggcaacaccgtcgatcaggagtccttcaactcc
atctacatgatggccgactccggtgcccgcggttccgccgcgcagatccgccagctcgcc
ggcatgcggggcctgatggccaagcccgatggctcgatcatcgagacgcccatcaccgcg
aacttccgcgaaggcctgaacgttctgcagtacttcatctccacccacggcgcccgcaag
ggcctggcggatacggcgctgaagaccgcgaactccggctacctgacgcgtcgcctggtc
gacgtgacccaggatctggtcgtgaccgaggaagactgcggcacgcacaacggttcgttg
atgcgcgccatcgtcgaaggcggtgaagtgatcgagtcgctgcgcgaccgtatcctgggc
cgtaccgcggccgaagacgtgctgcaccccgagaaccgttcggtgctcgcggcggccggc
acgctgctggaagaagacctgatcgaagagctcgaagccgccggcgtcgacgaggtcaag
gtccgcaccgcgctgacctgcgaaacccgcttcggcatctgcgccaagtgctacggacgc
gacctgggccgtggcggcctgatcaacctcggcgaagccgtcggtgtgatcgccgcccag
tccatcggcgagccgggcacccagctgaccatgcggaccttccacatcggcggcgcggct
tcgcgtgcggccgtcgcctccagcgtggaggccaagtccaacggcgtgatcggcttcaac
gccacgatgcgctacgtgagcaacaccaagggcgacctggtggtgatcgcccgttccggc
gagatcgtcatccacgacgaacacggccgcgagcgcgagcgccacaaggtgccttacggc
gccacgctgacggtgaaggccgaccagaccatcaaggccggcacgatcctcgccaactgg
gatccgctgacccgcccgatcatcacggaattcgccggtcaggtgcgtttcgagaacgtc
gaggaaggcctcacggtcgccaagcaggtcgacgaagtcaccggcctgtcgaccctggtc
gtgatcgatccgaagcgtcgtggctccaccaaggtcgtgcgtccgcaggtcaagctgatc
gacgcgcaaggccaggaagtcaagattccgggcaccgatcactcggtgaccatcggcttc
caggtcggctcgctggtgcaggtgcgcgacggacaggacgtgggccccggcgaagtgctg
gcgcgtattccggtcgaaggccagaagacccgcgacatcaccggcggtctgccgcgtgtg
gccgagctcttcgaagcccgttcgcccaaggacaagggcatgctggccgagatgaccggt
accgtgtccttcggcaaggaaactaagggcaaggtccggctgcagatcaccgatccggaa
ggcaaggtctgggatgaactgatccccaaggaaaagaacatcctggtgcacgaaggccag
gtcgtgaacaagggcgagtccgtcgtcgacggtccggccgatccgcaggacatcctgcgc
ctgctgggtatcgaggaactctcgcgctacatcgtcgatgaagtgcaggacgtctaccgt
ctccagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgt
cgtgtggtcgtcgagaacccgggtgagtccggctacatcggcggcgaacaggtcgagcgt
tcggagatgctcaacaccaacgatcgcctccgtggcgagagcaaggtgccggcgacctac
accaacctgctgctgggtatcaccaaggcgtccctgtcgaccgactcgttcatctcggcg
gcttccttccaggaaaccacccgcgtgctgaccgaagcggccatcatgggcaagcgcgac
gagctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgatccctgcaggcaccggc
atggcctaccacaacgcccgcaaggtgaaggacgagatggacgaggccgaacggaccgcc
atcgccgaagccgaagctgctgaaatgagcggtgacggcctgggcgacatcgccgaaacc
agcgaaggcgcttccgccgaataa
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integrated database retrieval system
