Xylophilus sp. GOD-11R: R9X41_01245
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Entry
R9X41_01245 CDS
T09600
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
R9X41_01245
09124 Replication and repair
03420 Nucleotide excision repair
R9X41_01245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xyg03021
]
R9X41_01245
03036 Chromosome and associated proteins [BR:
xyg03036
]
R9X41_01245
03400 DNA repair and recombination proteins [BR:
xyg03400
]
R9X41_01245
Enzymes [BR:
xyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
R9X41_01245
Transcription machinery [BR:
xyg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
R9X41_01245
Chromosome and associated proteins [BR:
xyg03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
R9X41_01245
DNA repair and recombination proteins [BR:
xyg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
R9X41_01245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
WPB57305
LinkDB
All DBs
Position
complement(266411..268792)
Genome browser
AA seq
793 aa
AA seq
DB search
MEEATRPTTDHPSSRYTVAVRTLCDFTGRGGDLDARFSSPSPSALEGIAGHTAVTARRPA
HYEREVALSGRYDALAVRGRADGFDPVAGRLEEIKTHRGDLSRQPARQRLLHWAQAEVYG
WLLCDARGLVEIELALVYYDIGTGAETVVTRRHSAESLHEAFESRCRRFLAWARSELAHR
AARDAALATLRFPFDDFRAGQRPLAEAVYRSQRDGLCLMAQAPTGIGKTIATLFPALRAC
PPAVPTQESRPGLDRVFFLTARTSGRQLALDAQADLRAANPGLPLRVLELVARDKACEYP
DRACNGDSCPLARGFYDRLAAARAQAAASPVALDRATTREIALAHGVCPYYLAQEMARWS
DLVVGDVNHWFDGSALLFALAMEAGWRCGLLVDEAHNLVERARGMYSARLDPVLLAVVRQ
SAPATLKRPLERLRRAWKALAPDDADATGRREFDMIPAGFLRALQDGVAALGDTLAESPG
GADTADLQRLWFDLLAFARRAEAFGAHSLFDATRLPGRTGVQLDIRNLVPAPFVAARFAA
ARAATLFSATLRPERYHRDLLGLPADTASLDVPSPYAAEQLQVRIARHISTRWQHREQSL
PAVADLLAAQFEAAPGNYLAFFSSFDYLQRALDSLQTRHPTIPVWAQSRGMGEPERDAFL
RRFAAGGQGIGFAVLGGVFGEGIDLPGDRLVGAFIATLGLPQVNPVNERRKQRLQTQFGA
DQGYDYAYLLPGMQKVVQAAGRVIRSASDRGVVWLMDDRFDQPRHRRLLPHWWHVESVAG
PALRPCASHETHE
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagcgacccggcccaccaccgaccacccctcgtcgcgctacaccgtcgcggtg
cgcaccctgtgcgacttcaccggccgtggcggtgacctcgacgcccgcttctcctcgcct
tcgccgtccgccctggaaggcatcgccggccacaccgccgtcaccgcgcgccggcctgcg
cactacgaacgcgaagtcgccctgagcggccgctacgacgcgctggccgtgcgcggccgc
gccgacggcttcgatcccgtcgccggccggctcgaggagatcaagacccaccgcggcgat
ctgtcgcgccagcccgcccgccagcgcctgctgcactgggcgcaggctgaggtctacggc
tggctgctgtgcgacgcacgggggctcgtggagatcgaactcgcgctggtctattacgac
atcggcaccggcgccgaaaccgtcgtcacccgccggcacagcgccgagtccctgcacgaa
gccttcgaatcgcgctgccgacgctttctggcctgggcgcgcagcgagctcgcccaccgc
gccgcgcgcgatgccgcgctggcaacgctgcgctttcccttcgacgatttccgcgccggc
caacgaccgctggccgaagcggtctaccgcagccagcgcgacggcctctgcctgatggcg
caggcgcccaccggcatcggcaagaccatcgcgacgctgttccccgctctgcgcgcctgt
ccgcccgccgtgccgacgcaagaaagccggcctgggctggaccgagtgttctttctcacc
gcgcgcacctccggccggcaactggcgctggacgcccaggccgacctgcgcgccgccaac
ccgggcctgccactgcgggtgctggaactggtcgcgcgcgacaaggcctgcgaatacccc
gaccgcgcctgcaacggcgattcgtgcccgctggcgcgcggcttctacgaccggctggcg
gccgcgcgcgcccaggccgccgccagcccggtcgcgctcgaccgcgccaccacccgcgag
atcgcgctggcccacggcgtctgcccctactacctcgcccaggaaatggcccgctggagc
gacctggtggtgggcgatgtcaaccactggttcgacggcagcgcgctgctgttcgcgctg
gcgatggaggccggctggcgctgcggcctgctggtggacgaggcgcacaacctggtggag
cgcgcgcggggcatgtattcggcgcggctcgacccggtgctgctggccgtcgtgcgccag
agcgcgcccgcgacgctcaagcgcccgctggagcggctgcggcgcgcctggaaagcgctt
gcgcccgacgatgccgacgcgaccggccgccgcgagttcgacatgattcccgccggcttc
ctgcgcgcgctgcaggacggcgtggccgccctcggcgacaccctggccgaatcccccggc
ggcgccgacacggccgacctgcagcgcctgtggttcgacctgctggccttcgcccggcgc
gccgaggccttcggcgcgcattcgctgttcgacgccacccggctgccgggccgcaccggc
gtgcagctcgacatccgcaatctggtgccggcgccctttgtcgcagcgcgcttcgccgcc
gcccgcgccgccaccctgttctcggccaccttgcggcccgagcgctaccaccgcgacctg
ctcggcctgccggcggataccgccagcctcgacgtgccatcgccctacgcggccgagcag
ttgcaggtgcgcatcgcccgccacatctccacccgctggcagcaccgcgaacaatcgctg
ccggccgtggccgacctgctcgccgcgcagttcgaggccgcgcccggcaactacctggcc
ttcttcagcagcttcgactacctgcagcgcgccctcgacagcctgcagacgcgccacccc
acgatccctgtctgggcgcagtcgcgcggcatgggcgagcccgagcgcgatgccttcctg
cggcgcttcgcggcgggcgggcagggcatcggtttcgcggtgctgggcggggtgttcggc
gagggcatcgacctgccgggcgaccggctggtcggcgccttcatcgccacgctcgggctg
ccgcaggtcaatccggtcaacgaacgacggaagcaacgactgcagacgcaattcggcgcc
gaccagggctacgactacgcctacctgctgccgggcatgcagaaggtggtgcaggcggcc
gggcgggtgatccggtcggcatccgatcgtggcgtggtgtggctgatggacgaccgcttc
gaccagccgcgccaccgccggctgctgccgcactggtggcatgtcgaatctgtcgccggc
ccggcgcttcggccctgcgcatcgcacgagacacacgaatag
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