Xylophilus sp. GOD-11R: R9X41_05570
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Entry
R9X41_05570 CDS
T09600
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R9X41_05570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xyg03019
]
R9X41_05570
03400 DNA repair and recombination proteins [BR:
xyg03400
]
R9X41_05570
Enzymes [BR:
xyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R9X41_05570
Messenger RNA biogenesis [BR:
xyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R9X41_05570
DNA repair and recombination proteins [BR:
xyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R9X41_05570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WPB58109
LinkDB
All DBs
Position
complement(1220021..1221541)
Genome browser
AA seq
506 aa
AA seq
DB search
MPRSPHNAKPLPDLVRTTLRKTFRLKTLRPGQQETIERVLASRSTLAVMPTGAGKSLCYQ
LPAVLLPGITLVVSPLIALMQDQCSALNALGVQAVQLNSAIDTEELQQAEAAIARRTARI
VLTTPERLADPKFQDLLAEGAPVSLLVVDEAHCISQWGHDFRPAFLEIAAARKALGQPPV
LALTATATEAVAADIRAQLGIPVSGMVETGTYRPNLDYAVDLLTNSAEKLARTVALVRDS
SGAGLVYAATVKAAEAVRDALLAADVPDVGLYHGKLGPTERHDVQQAFMAGEIRVVVATN
AFGLGIDKQDIRFVIHHQMPGSLDAYYQETGRAGRDGQRCDCTLLFLRKDRAVQQFFLTG
RYPDLADLDALWAALQAPAPDDGWSLQALADATDRPVGKLKVCVSLLRQRRIVSVDPRGV
VRLRRADVESAVLEAAMQTYQDKRTADRASLERMVDYAQSGRCRWQVLLESVGHDREIDR
PPCGHCDTCRRIAQAQQETNALPLAA
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgccccgctctccccacaacgccaagccactgcccgacctcgtgcgcaccacgctgcgc
aagaccttccgactcaagacgctgcgaccgggccagcaggaaaccatcgagcgcgtattg
gccagccggtcgacgctggccgtgatgccgaccggcgccggcaagtcgctctgctaccag
ttgcccgccgtgctgctgccgggcatcacattggtcgtgtcaccgctgatcgcgctgatg
caagaccagtgctcggcgctcaacgcgctcggcgtgcaggcggtgcagctcaacagcgcg
atcgacaccgaggaactgcagcaagccgaagccgcgatcgccaggcgtaccgcgcgcatc
gtgctgaccacgccggaacgcctggccgatccgaagttccaggacctgctcgccgaaggc
gccccggtgtccttgctggtggtggacgaagcgcactgcatcagccaatggggccatgat
ttccgcccggctttcctggagatcgccgccgcacgaaaggcactgggccagccaccggtg
ctggcactgaccgccaccgcgaccgaagcggtcgccgccgacatccgcgcccagctcggc
atcccggtgtccggcatggtggagaccggcacctaccgacccaacctcgactacgccgtc
gacctgctcaccaacagcgccgaaaaactggcgcgcaccgtggccctggttcgcgattca
tccggcgccggcctggtctacgccgcgacggtgaaggccgccgaggcggtgcgcgatgcc
ttgctcgcggccgatgtgccggacgtcggtctctaccacggcaagctcgggccgacggaa
cgccatgacgtgcaacaagccttcatggcgggcgagatccgcgtggtggtcgccaccaac
gccttcggtctgggcatcgacaagcaggacatccgcttcgtcatccaccaccagatgccc
ggctcgctcgacgcctattaccaggaaaccggccgtgccggacgcgacggccaacgttgc
gactgcaccctgctctttctgcgcaaggacagggcggtgcagcaattctttctgaccggc
cgctacccggatctggccgatctcgacgccctgtgggccgcgctgcaagcgcccgcaccc
gacgacggctggagtctgcaggcgttggccgacgccaccgatcgcccggtcggcaagctc
aaggtatgcgtcagcctgctgcggcagcggcgcatcgtctcggtggatccacgcggcgtg
gttcggctgcgcagagcggatgtggaatcggcggtgctcgaggcggcgatgcagacctac
caggacaagcgaacagccgaccgtgcgtcgcttgaacgcatggtcgactacgcccagtcc
ggccgttgccgttggcaggtgctgctggaaagcgtcggccacgaccgcgaaatcgaccgg
ccaccgtgcggccactgcgacacctgccgccgcatcgctcaggctcagcaggaaacaaac
gcattacccctggcggcctga
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