Xylophilus sp. GOD-11R: R9X41_05620
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Entry
R9X41_05620 CDS
T09600
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03030
DNA replication
xyg03410
Base excision repair
xyg03420
Nucleotide excision repair
xyg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R9X41_05620 (polA)
03410 Base excision repair
R9X41_05620 (polA)
03420 Nucleotide excision repair
R9X41_05620 (polA)
03440 Homologous recombination
R9X41_05620 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xyg03032
]
R9X41_05620 (polA)
03400 DNA repair and recombination proteins [BR:
xyg03400
]
R9X41_05620 (polA)
Enzymes [BR:
xyg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R9X41_05620 (polA)
DNA replication proteins [BR:
xyg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R9X41_05620 (polA)
DNA repair and recombination proteins [BR:
xyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
R9X41_05620 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R9X41_05620 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
WPB58118
LinkDB
All DBs
Position
1233242..1236094
Genome browser
AA seq
950 aa
AA seq
DB search
MSDLPNAAAPAAPDTAADSTTAPGHNTLLLVDGSSYLYRAFHAMPDLRAVAGDMNSPATG
AIRGMVNMLAALRREVRAHYAACVFDASGPTFRDHLYPEYKAHRSPMPPDLRSQVEPIHE
VVKLLGWPVLCVPHVEADDVIGTLAAAAARQGMEVIVSSGDKDLSQLVDEHITIIDTMNG
KKRDIAGVTAEFGVPPQLMIDYQTLIGDTVDNVPGVPKVGPKTAAKWLLEYGSLEGLLAQ
ADKIKGVAGENLRASLDWLPKGRELVTIRTDCDLAEHIVGLPSLEGIAMGAQRTDELKAF
YERFGFKGLVQSLNAQDVAPERIEKSKKPGRAPDPGLFDEPEAIAADKVSNLRYDTIVDW
ALFDTWFARVQAAELVAIDTETTSLDEMRAEIVGISWSVEPGEAAYIPLTHDYPDAPPQL
PRDEVLARLKPWLEDATRAKLGQHVKYDRHVFANHGIEVGGYRHDTMLQSYVLEVHKPHG
LGSLAERHLGRSGISYEDLCGKGASQIPFSQVAIEKAAEYSCEDSDQTLDVHRTLWPRLQ
ADEKLLAIYELEMASSEALYRIERNGVMIDAALLAQQSHQLGQRILELEQQAHELAGQPF
NLGSPKQIGEIFFVKLGLPIVKKTPSGAPSTDEEVLEKLAEDYPLPARILEHRGLSKLKG
TYTDKLGTLALPRTGRVHTHYAQAVAVTGRLSSNDPNLQNIPVRTAEGRRIREAFVAPAG
SVIASADYSQIELRIMAHLSGDEALLRAFQEGLDVHRATAAEVFGVEVDAVASEQRRYAK
VINFGLIYGMSSFGLSKSLGIETKAAAAYIDRYFQRFAGVKRYMDETRASAKEKGYVETV
FGRRLYLPEINSPNGPRRGGAERAAINAPMQGTAADLIKLSMVEVQKVLDAEKRGTRVIM
QVHDELVFEVPQDEVDWVRAEVPRIMAGVAQLQVPLLAEIGFGANWETAH
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacctcccgaacgcagcggccccggccgcgcccgacaccgccgccgactccacc
accgcgccgggacacaacaccctgctgctggtcgacggctccagctacctctaccgtgcc
ttccacgccatgcccgatttgcgggcggtggcgggcgacatgaacagcccggcgaccggg
gcgatacgcggcatggtcaacatgctggccgcgctgcgccgcgaagtgcgcgcccattac
gcggcctgcgtcttcgatgcttcgggcccgaccttccgcgaccatctctatccggaatac
aaggcccatcgaagcccgatgccgccggacctgcgcagccaggtcgagccgatccacgag
gtggtcaagctgctgggctggccggtgctgtgcgtgccgcacgtggaggccgacgacgtc
atcggcacgctggccgcggctgccgcgcggcagggcatggaagtcatcgtttccagcggc
gacaaggacctgagccagctggtcgacgagcacatcaccatcatcgacacgatgaatggc
aagaagcgcgacatcgccggcgtgacggccgagttcggcgtgccgccgcagctgatgatt
gattaccagacgctgatcggcgacacggtggacaacgtgccgggcgtgcccaaggtcggc
cccaagacggccgccaaatggctgctggaatacggctcgctcgaaggcctgctggcccag
gcggacaagatcaagggcgtggcgggcgagaacctgcgtgcctcgctcgactggctgccc
aagggccgcgaactggtcaccatccgcaccgattgcgatctggccgagcacatcgtggga
ttgccttcgctcgaaggcatcgcgatgggcgcgcagcgcaccgacgaactcaaggccttc
tacgagcgcttcggcttcaaggggttggtgcagtcgctcaacgcgcaggacgtagcgccc
gagcggatcgagaagtcgaaaaaacccggccgcgcaccggacccgggcctgttcgacgag
ccggaggcgatcgcggccgacaaggtgagcaacctgcgctacgacaccatcgtcgactgg
gcgctgttcgacacctggttcgcccgggtgcaggcggccgaactggtggcgatcgacacc
gagacgacctcgctcgacgagatgcgcgccgagatcgtcggcatcagctggagcgtggag
ccgggcgaagcggcctacattccgctgacccacgactatcccgacgcgccgccgcagctg
ccgcgcgacgaggtgctggcgcgcctcaagccctggctggaagacgccacgcgcgccaag
ctcggccagcacgtcaagtacgaccgccacgtgttcgccaaccacggcatcgaggtcggc
ggttaccgccacgacaccatgctgcagagctatgtgctcgaggtgcacaagccgcacggg
ctgggcagcctcgccgagcgccatctgggccgcagcggcatcagctacgaagacctttgc
ggcaagggcgccagccagatcccgttcagccaggtggcgatcgagaaggccgccgagtac
tcgtgcgaggactccgaccagacgctggacgtgcaccgcacgctctggccgcgcctgcag
gccgacgagaagctgttggccatctacgagctggagatggccagcagcgaggcgctctac
cgcatcgagcgcaacggcgtgatgatcgacgcggccctgctcgcgcagcagagccaccag
ctcggccagcgcatcctggagctggagcagcaggcccacgagctggcgggccagcccttc
aacctgggcagccccaagcagatcggcgagatcttcttcgtgaagctcggcctgccgatc
gtcaagaagacgccgagcggtgcgcccagcaccgacgaggaggtgctggagaagctggcc
gaggactacccgctgccggcgcggatcctggagcaccggggtctgtccaagctcaagggc
acctacaccgacaagctcggcacgctggcgctgccgcgaaccggccgcgtccacacgcat
tacgcgcaggcggtggcggtgaccggacggctgtcgagcaacgaccccaacctgcagaac
attccggtgcgcacggcagaaggccggcgcatccgcgaagccttcgtggcgccggccggc
agcgtgatcgcgagtgccgactacagccagatcgagctgcggatcatggcgcacctcagc
ggcgacgaggccctgctgcgcgcgttccaggaaggcctggacgtgcaccgcgccacggcc
gccgaagtgttcggcgtggaggtcgacgcggtcgccagcgagcagcgccgctatgcgaag
gtcatcaacttcggactcatctacggcatgagcagcttcgggctctccaagagtctgggc
atcgagaccaaggccgctgccgcctacatcgaccggtatttccagcgcttcgcaggcgtc
aagcgctacatggacgaaacgcgggcgtcggccaaggaaaaaggttatgtcgagaccgtg
ttcggccggcgcctctatctgcccgagatcaattcgcccaacggcccgcgccggggcggc
gcagagcgcgcggcgatcaacgcgccgatgcagggcacggcggccgacctgatcaagctc
agcatggtcgaggtgcagaaggtgctcgacgccgagaagcgcggcacccgcgtgatcatg
caggtacacgacgaactggtgttcgaggtaccgcaggacgaggtcgattgggtgcgcgcc
gaggtgccgcgcatcatggccggcgtggcgcagttgcaggtgcccttgctggccgagatc
ggctttggcgccaattgggaaaccgcgcactga
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