Xylophilus sp. GOD-11R: R9X41_08060
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Entry
R9X41_08060 CDS
T09600
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R9X41_08060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xyg03019
]
R9X41_08060
Enzymes [BR:
xyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R9X41_08060
Messenger RNA biogenesis [BR:
xyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R9X41_08060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
B12-binding
CMS1
Motif
Other DBs
NCBI-ProteinID:
WPB58577
LinkDB
All DBs
Position
complement(1743488..1744783)
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AA seq
431 aa
AA seq
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MPFSALGLSPELVHAIGTLGLRTPTPIQAEAIPPALGGADLLATAQTGSGKTVAYALPLL
QRLPPPVIEQRRRLPQALVLVPTRELAVQAGELLRDLARQMPGRPQVAVVFGGVSANPQM
MALRGGCDVVVATPGRLLDLVDHNALSLSSLACLVLDEADRLLDLGFAEELQRVLGLLPE
RRQNLFFSATFPPAVEALARGLLRDPVRVEIATTDEGRPDIAQRAVLVDTGQRTALLRHL
QKAHAWKRALVFVATRYTAEHVADKLYKKGVFATAFHGELSQGARQQILDEFKAGRWDLL
LTTDLAARGIDIEDMGVVVNYDLPRSAVDYVHRIGRTGRAGASGVAVSFVSASTEAHFRL
IEKRNGVAIEREIIAGFEPVETTPAPAPAEAPSGAGGIKGRRPSKKDKLRAAAAQAALAS
QRADEPPQEKS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttccgccctcggcctgtcgccggaactcgtccacgccatcggcacgctgggc
ttgcgcacacccacgcccatccaggcggaggcaattcccccggcactgggcggggccgac
ctgctcgccacggcccagaccggctccggcaagaccgtcgcgtatgccctgcccctgctg
cagcgcctgccgccaccggtcatcgaacagcgccgccgcctgccgcaagccctggtgctg
gtgcccacccgcgaactcgcggtgcaagccggtgaactgctgcgcgacctggcccgccag
atgccgggccggccgcaggtggcggtcgtcttcggtggcgtgtcggccaacccgcagatg
atggccttgcgcggaggttgcgacgtggtggttgccacgcccgggcgcctgctcgacctg
gtcgaccacaacgccctgtcgttgtcatccctcgcctgcctggtgctcgacgaggccgat
cgcctgctcgacctgggctttgccgaagagctgcagcgcgtgctcggcctgctgcccgag
cgccggcagaacctgttcttctcggccaccttcccgccggctgtcgaggccctggcgcgt
ggcctgctgcgcgacccggtgagggtggaaatcgccaccaccgacgaaggccgccccgac
atcgcacagcgcgccgtgctggtcgacaccggacagcgcaccgcgctgctgcgccatctg
caaaaagcccacgcctggaaacgcgcgctggtcttcgtcgccacccgctacaccgccgaa
cacgtggccgacaagctctacaagaaaggcgtgttcgccaccgccttccacggcgagctg
agccagggcgcgcgccagcagatcctggatgaattcaaggccggccgctgggacctgctg
ctgaccaccgatctcgccgcgcgcggcatcgacatcgaggacatgggcgtggtcgtcaac
tacgacctgccgcgctcggcggtcgactacgtgcaccgcatcggccgcaccggacgtgcc
ggcgccagcggcgtggcggtgagttttgtgagcgcgagcaccgaagcgcatttcaggttg
atcgagaagcgcaacggcgtggcgatcgagcgggaaatcattgccggcttcgagccggtg
gagaccacgcccgcgccggccccggcagaagcgccgtccggcgccggcggcatcaagggc
cggcgtccgagcaagaaggacaagctgcgcgcggcggcggcccaggcggcactggcgagc
cagcgcgccgacgagcccccccaagagaagagttaa
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