Xylophilus sp. GOD-11R: R9X41_08790
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Entry
R9X41_08790 CDS
T09600
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R9X41_08790 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xyg03021
]
R9X41_08790 (rho)
03019 Messenger RNA biogenesis [BR:
xyg03019
]
R9X41_08790 (rho)
Transcription machinery [BR:
xyg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
R9X41_08790 (rho)
Messenger RNA biogenesis [BR:
xyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
R9X41_08790 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA
AAA_22
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WPB58717
LinkDB
All DBs
Position
complement(1875627..1876889)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEELEIENTGRMRKQELMFAIIKKRAKAGEQIFADGVLEILPD
GFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDMVN
GGPAENNKHKVMFENLTPLFPKEQMKLERDMKGEENITGRIIDIIAPIGRGQRALIVAPP
KSGKTMMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGEIIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIHLNRRLYEKRVFPAIEL
NKSGTRREELLLAPEILQKTRILRQFMYNMDEIESMELMIKNMRATKTNVDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaacgaactcaaggcactgcacgtgtccgaggtcctcaagcaggccgaagaa
ctcgaaatcgaaaacaccggccgcatgcgcaagcaagagctgatgttcgcgatcatcaag
aagcgcgcaaaggcaggagagcagatcttcgccgacggcgtgctcgagatcctgcccgac
ggcttcggcttccttcgcagcccggacaccagcttcaccgccagtaccgacgacatctac
atctcgccgagccaggtgcgccgcttcaacctgcacaccggcgacatgatcgagggcgag
gtccgcacgcccaaggacggcgagcgctacttcgcgctgaccaagctcgacatggtcaac
ggcggccccgccgagaacaacaagcacaaggtgatgttcgagaacctcacgcccttgttc
cccaaggagcagatgaagctcgagcgggacatgaagggcgaggagaacatcaccggccgc
atcatcgacatcatcgcccccatcggtcgcggccagcgtgccctgatcgtggcgccgccc
aagagcggcaagacgatgatgatgcagcacatcgcccacgccatcaccgccaacaatccg
gacgtgcacctgatggtgctgctggtcgacgagcggcccgaggaagtgaccgagatgcag
cgcacggttaagggcgaaatcatcgcctcgaccttcgacgaacccgcggcgcgccacgta
cacgtggccgaaatggtgatcgagcgggccaagcgcctggtcgagctcaagaaggacgtc
gtcatcctgctcgactccatcacccgcctggcccgggcctacaacaacgtggtgccgtct
tcgggcaaggtgctctccggcggtgtcgactccaacgcgctgcagcgccccaagcgcttc
ttcggcgcggcccgcaaggtcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
gtcgacaccggcagccgcatggacgaagtcatcttcgaagagttcaagggcaccggcaac
agcgaaatccacctgaaccgccgcctgtatgaaaagcgcgtgttcccggccatcgagctc
aacaagtcgggcacccgccgcgaagagctgctgctggcgcccgagatcctgcagaagacc
cggatcctgcgacagttcatgtacaacatggacgagatcgagtcgatggagctgatgatc
aagaacatgcgggcgaccaagaccaatgtcgacttcttcgacatgatgaggcgcggcggg
taa
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