Xylophilus sp. GOD-11R: R9X41_09170
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Entry
R9X41_09170 CDS
T09600
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xyg
Xylophilus sp. GOD-11R
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xyg03019
]
R9X41_09170 (hrpA)
Enzymes [BR:
xyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
R9X41_09170 (hrpA)
Messenger RNA biogenesis [BR:
xyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
R9X41_09170 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
WHD_HA2
NACHT
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_25
AAA_30
nSTAND_NTPase5
PhoH
AAA_23
TsaE
SRP54
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
WPB58789
LinkDB
All DBs
Position
1952771..1956865
Genome browser
AA seq
1364 aa
AA seq
DB search
MSVSDPRQPTSSATEPAPARPRIEFPESLPVSARREEIMAALAAHQVVIVSGETGSGKTT
QLPKIALAMGRGKLNAPPGKGRLIGHTQPRRIAASSVAKRIAEELKTPLGEVVGYKVRFQ
DRLSRDASVKLMTDGILLAETQTDPLLKAYDTIIIDEAHERSLNIDFLLGYLREILPRRP
DLQVIVTSATIDADRFANHFASARGPAPVIHVTGRTFPVEQRWRPFEESRDYGMNEAIAD
AVDELWQDPRQSGDILVFFPGEREIREAADHLRGHLSHHAVLRNAEVLPLFARLSQAEQD
RIFESHSGRRIVLATNVAETSLTVPGIRYVIDTGTARVKRYSYRSKVEQLLVEPISQAAA
NQRAGRCGRVANGICIRLYGEDDFAGRPRFSDPEILRSSLAGVILRMKSLRLRDVEEFPF
LEAPQKRAISDGYQLLSELGAVDDDNQLTPVGQELSRLPLDPRIGRMILEGRDRGALDEV
LTIASALSVQDVRDRPMDAQAQADQAHAKFDDDRSEFSGYLKLWKWLHDARGGAPVATTR
RQMAAQQPGAGARRGNQAFLPVSQRSVAPAVAAPPAPAVAEAPTHKLSNRQYEQLLRANF
ISIRRVREWRDIHSQLVATVQEHHWPINADPASYEQLHQAMLAGLLGNIGFRPEDAGSAG
STQAGGAGRGAAGGGEYLGARGIKFHKHPGAHLSKKPGRWIVAAELVETTRLFGRGIAAI
EPTWLEEVGSHLLKKQLLDPHWEKRGSEVVALERATLYGLVVYSGRRVPYARVDMAAARE
IFIREALVGEQWESKLPFLAANRKLIRQVEELEHKSRRQDVLVDDELIYAFYDQHLPPDV
FDGRSLEHWWREASRGQPRLLHLERDELMRHEAAGITTDAFPRTLRMGGVDCATEYLHEP
GNARDGLSVAVPIFVLNQIGEDRAEWLVPGMLRDKVQALLKSLPQKPRARLVPLPESAAR
ITQALVEPTVFGHGTLIDAVLKLVRETTQLDVKRADFKPDMVPPHLFMHLRVLDEHGRQL
GQGRSLAALKAELGGQARGAFQALAGLRAPAAPAAPASAAPAPKAAAGGATRAAPTAPSA
PAGQRYTDWTFGELPELMEIRKGGQTLVGFPALIDDGDAVHIEVFDEPELAAQRHRGGLR
RLFALQMKEALKYLEKSIPDLQKMAVAFMPLGTQDQLRQQIVDVALDRAFLLEPLPTDAD
AFKKRVDEGRGRLTLIAHEVARLGLRVLTDYAGAVRKIKDTRGQPHVTADVQAQLQRLVP
RDFLSATPWAQLQHLPRYLQAIVMRLDKLRADPARDTARMADVKLQDQRFWRLVAERKGN
VDARMQELRWLLEELRVSLFAQELRTPGPVSVKRLDKAWALLNT
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtatccgacccgcgccagcccacgtcttccgccaccgaaccagcgcctgcccgg
ccgcgcatcgagttccccgaatcgctgccggtctcggcccggcgcgaagaaatcatggcc
gcgctcgcagcgcaccaagtcgtcatcgtcagcggcgaaaccggctccggcaagaccacg
cagctgcccaagatcgcgctggccatggggcgcggcaagctcaatgcgccgcccggcaag
ggccggctcatcggccatacccagccgcgccgcatcgccgcgtcgtcggtggccaagcgc
atcgccgaagaactgaagacaccgctcggtgaagtggtcggctacaaggtgcgcttccag
gaccggctgagccgcgacgcctcggtcaagctgatgaccgacggcatcctgctggccgaa
acgcagaccgatccgctgctcaaggcctacgacaccatcatcatcgacgaggcccacgag
cgcagcctcaacatcgacttcctgctgggctacctgcgcgagatattgccgcgccgcccc
gacctgcaggtgatcgtgacctcggccacgatcgacgccgaccgcttcgccaaccatttc
gcctcggcccgggggccggcgccggtcatccacgtcaccggccgcaccttcccggtggag
caacgctggcggccgttcgaggaaagccgcgactacggcatgaacgaagccatcgccgac
gcggtcgacgagctctggcaggacccccggcaaagcggcgacatcctggtgttctttccc
ggcgagcgcgagatccgcgaggccgccgaccatctgcgcggccacctcagccaccacgcg
gtgctgcgcaacgccgaggtgctgccgctcttcgcccggctgtcgcaggccgagcaggac
cgcatcttcgagagccattccggccggcgcatcgtgctggccaccaacgtcgccgaaacc
tcgctgacggtgccggggatccgctacgtgatcgacaccggcaccgcccgcgtcaagcgc
tacagctaccgcagcaaggtggagcagttgctggtggagccgatcagccaggcggcggcc
aaccagcgcgcgggccgctgcgggcgggtggccaacggcatctgcatccggctctacggc
gaagacgacttcgccggccggccgcgtttctcggaccccgaaatcctgcgttcgtcgctg
gccggcgtcatcctgcggatgaagtcgctgcgcctgcgcgacgtggaggagtttccgttt
ctggaggcgccgcagaagcgcgcgatttccgacggctaccagctgttgtccgaactcggc
gcggtggacgacgacaaccagctaactccggtcggccaggagctgtcgcgcctgccgctc
gatccgcgcatcggccgcatgatcctggaaggccgcgaccgcggcgcgctcgacgaggtg
ctcaccatcgccagcgcgctcagcgtgcaggacgtgcgcgaccgcccgatggacgcccag
gcccaggccgaccaggcgcacgccaagttcgacgacgaccgaagcgagttcagcggctat
ctcaagctctggaaatggctgcacgacgcacgcggtggcgcgccggtggccaccacgcgg
cggcagatggcggcgcagcagccgggagccggcgccaggcgcggcaaccaggcctttctg
ccggtgtcgcagcgcagcgtggcgccggctgtcgccgcgccgccggccccggcggtggcc
gaggcgcccacccacaagctgagcaaccggcaatacgagcaactgctgcgcgccaatttc
atcagcatccgccgggtgcgcgaatggcgcgacatccactcgcaactcgtcgccacggtg
caggagcaccactggccgatcaacgccgatccggccagctacgaacagctgcaccaggcc
atgctcgccgggctgctgggcaacatcggctttcgtccggaagacgccggcagcgcgggt
agcacccaggccggcggggcagggcggggtgcggcgggcggcggcgaatacctgggcgcg
cgcggcatcaagttccacaagcatccgggcgcgcatctgtcgaagaagcccggtcgctgg
atcgtcgcggccgagctggtcgaaaccacccggctattcggccggggcatcgccgcgatc
gagccgacctggctcgaagaggtcggctcgcatctgctcaagaagcaactgctcgacccg
cactgggaaaaacgcggctcggaagtcgtcgcgctggagcgcgccacgctctacggcctg
gtggtgtacagcggccggcgcgtgccctatgcgcgggtcgacatggccgcggcgcgcgag
atcttcatccgcgaggcgctggtcggcgagcaatgggaatcgaagctgccgttcctggcg
gccaaccgcaagctgatccgccaggtggaagaactcgagcacaagtcgcgccgccaggac
gtgctggtggacgacgaactcatctatgccttctacgaccagcacctgccgccggacgtg
ttcgacggccgcagcctggagcactggtggcgcgaggcctcgcgcggccagccgcggctg
ctgcacctggagcgcgacgagctgatgcgccacgaggcggccggcatcaccaccgacgcc
tttccccgcacgctgcgcatgggcggcgtcgactgcgcgaccgaatacctgcacgaaccg
ggcaatgcgcgcgacgggttgtcggtggcggtgccgatcttcgtgctcaaccagatcggc
gaagaccgcgccgaatggctggtgccgggcatgctgcgcgacaaggtgcaggcgctgctc
aagagcctgccgcagaagccgcgcgcgcgcctggtgccgctgcccgagagcgccgcgcgc
atcacccaggcgctggtcgagcccacggtgttcggccacggcacgctgatcgacgcggta
ttgaagctggtgcgcgagaccacgcagctcgacgtgaagcgcgccgacttcaagccggac
atggtgccgccgcacctgttcatgcacctgcgggtgttggacgaacacggccgccagctc
ggccagggtcgcagcctggccgcgctcaaggccgagctcggcgggcaggcgcgcggggcc
ttccaggcgctggccggactgcgggcgccggccgcacctgccgcaccggcatccgccgcg
cctgcgcccaaggcggcagccggtggcgcgacccgggccgcccccaccgcgccgtcggca
ccggcaggccagcgctacaccgactggaccttcggcgaactgcccgagctgatggagatc
cgcaagggcggccagacgctggtcggctttcccgccctcatcgacgacggcgacgcggtg
cacatcgaggtgttcgacgagcccgagctcgcggcgcaacgccatcgcggcggcctgcga
cggctgttcgcgctgcagatgaaggaggccttgaaatacctggagaagtcgattcccgac
ctgcagaagatggcggtcgccttcatgccgctgggcacgcaggaccagctgcgccagcag
atcgtggacgtggcgctggaccgcgccttcctgctcgagccgttgcccaccgacgccgac
gctttcaagaagcgggtggacgaaggccggggccggctcaccctcatcgcccacgaagtc
gcccgtctgggcctgcgggtgctgaccgactatgcgggcgcggtgcgcaagatcaaggac
accaggggccagccccatgtgacggctgacgtgcaggcccagttgcagcggctggtgccg
cgcgatttcctgtccgccacgccctgggcgcagctgcaacacctgccgcgttatctgcag
gccatcgtgatgcggctcgacaagctgcgcgccgatccggcccgcgacaccgcgcgcatg
gccgacgtgaagctgcaggaccagcgcttctggcggctggtggccgagcgcaagggcaat
gtcgacgcccgcatgcaggagctgcgctggctgctggaagaactgcgggtgagcctgttc
gcgcaggagctgcgcacgcctggcccggtgagcgtgaagcggctcgacaaggcctgggcg
ttgctcaatacctga
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