Xylophilus sp. GOD-11R: R9X41_12520
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Entry
R9X41_12520 CDS
T09600
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03030
DNA replication
xyg03430
Mismatch repair
xyg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R9X41_12520 (dnaE)
03430 Mismatch repair
R9X41_12520 (dnaE)
03440 Homologous recombination
R9X41_12520 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xyg03032
]
R9X41_12520 (dnaE)
03400 DNA repair and recombination proteins [BR:
xyg03400
]
R9X41_12520 (dnaE)
Enzymes [BR:
xyg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R9X41_12520 (dnaE)
DNA replication proteins [BR:
xyg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
R9X41_12520 (dnaE)
DNA repair and recombination proteins [BR:
xyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
R9X41_12520 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WPB54996
LinkDB
All DBs
Position
complement(2653079..2656549)
Genome browser
AA seq
1156 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDDVVKAAAADGQPALAITDLNNLFGAVKFYKAARGKGVKP
LIGAEIFLEGLGADAAALSRVIVLVQSWKGYLNLSELLARAWTTNVVKAQAVCKLAWLRE
LNDGMILLAGAQAGPVGQALVRGDESTATDFALQLAGIFPHRFYLEIQRAGRTDDEAHTV
AAVQLAARLALPVVATQPVQFTEVDDYEAHEARVCISEGEILGNQRRVRKFTREQFFKSA
VQMEALFADVPSAIANTVEIARRCSIVLDLGKPQLPDFPTPGGMPMADYFRVASFEGLEV
RLEHLYPDAARRDAERPRYVERLEFEINTILKMGFPGYFLIVGDFINWAKNNGCPVGPGR
GSGAGSLVAYALKITDLDPLEYNLLFERFLNPERVSMPDFDIDFCQGNRDRVIDYVKQKY
GREAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGQHITIAGALEVEPV
LAERLAKEEDVRTLLELAQKLEGMTRNIGMHAGGVLIAPGKLTDFCPLYQQPGSDSAVSQ
YDKDDVEAIGLVKFDFLGLATLTILEIAREFIVKRHKGQEKFAYENIPLDDAGTYRLFAD
GKTEAVFQFESRGMQGMLRDAKPTRLEDLIALNALYRPGPMDLIPSFVARKHGREVVEYP
HPMVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAMGKKKIEEMAMHREIFRK
GAAVNGISQEKADEIFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVHFRAEFYCANMTV
EMDDTDKLRVLFEDAQKLGMTFEPPDVNRGNYRFEPVSNTVIRYGLGAVKGTGQSAIEAV
VAAREEGGAFTSLFDFCNRVDRQRINKRTVEALIKAGAFDSIQQNRASLVASIDRAFEYG
AAQAANVHQGGLFDMADDGHGSSTQEPDLVAARPWGIKERLVFEKTAVGFYLSGHLFDEV
SREVRQFVRREIGDLVDSREPVTLAGIITELRVINGQRGKLGLMKLDDKSGVIEATADEA
VLNANRNLLKDDEMVIITGKLQPDRFTGGVRLKVEQVMDLASARCRFGKFLRVAVNGKAP
DIQRIVRDFPPVKEVSEHGEIVRGLEVRLAVRREAGSMEVGVDLKLDERSRFFPTDAALS
SWMAQAEQGKAVIVYE
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgttcgttcacctccgcctgcacaccgagttctccgtcgtcgacggcaccaaccgaatc
gacgacgtggtcaaggccgccgccgccgacggccagcccgctctggccatcaccgatctc
aataacctcttcggagcggtcaagttctacaaggccgcgcgcggcaagggcgtcaagccg
ctcatcggggcggaaatctttctggaagggctgggcgccgatgccgccgcgctgtcgcgg
gtgatcgtgctggtgcagtcgtggaagggctatctcaacctgtccgaactgctggcgcgc
gcctggacgaccaacgtggtcaaggcccaggccgtctgcaagctggcctggttgcgtgag
ctcaacgacgggatgatcctgctcgcgggtgcgcaggccgggccggtcggccaggcgctg
gtgcgtggcgacgagtcgaccgccaccgatttcgcgctgcagctggcgggcatcttcccg
catcgcttctatctggagatccagcgcgccggccgcaccgacgacgaggcgcacaccgtg
gctgcggtgcagctcgctgcgcggctcgcgctgccggtggtggcgacgcagccggtgcag
ttcaccgaggtcgacgactacgaggcgcacgaggcacgggtctgcatttccgaaggcgag
atcctcggcaaccagcgccgggtgcgcaagttcacccgcgagcagttcttcaagagcgcc
gtgcagatggaagcgctgttcgccgacgtgccgagcgccatcgccaacacggtagagatc
gcgcggcgctgcagcatcgtgctcgacctgggcaagccgcagctgcccgactttcccacg
cccggcggcatgccgatggccgattacttccgggtggcatccttcgaagggctggaggtg
cggctggagcacctctaccccgacgcggcccggcgcgacgccgagcggccgcgctacgtg
gagcggctggagttcgagatcaacaccatcctgaagatggggttcccgggttacttcctg
atcgtgggcgacttcatcaactgggccaagaacaacggctgcccggtggggccgggccgg
ggctcgggtgcgggttcgctggtggcctacgcgctcaagatcaccgacctggacccgctc
gaatacaacctgctcttcgagcgcttcctgaacccggagcgggtgtcgatgcccgacttc
gacatcgacttctgccagggcaaccgcgaccgcgtcatcgactacgtgaagcagaagtac
ggtcgcgaggcggtgagccagatcgcgaccttcggcaccatggccgcgcgcgcggccatc
cgcgacgtgggccgggtgctcgacatgagctacaccttctgcgacggcatcagcaagttg
attcccaacaagccggggcagcacatcacgatcgccggcgcgctggaggtggagccggtc
ctcgcggaacgcctggccaaggaagaggacgtgcgcacgctgctggagctggcgcagaag
ctcgaaggcatgacccgcaacatcggcatgcacgccggcggcgtgctgatcgcgccgggc
aagctcaccgacttctgcccgctctaccagcagccgggcagcgattcggccgtgagccag
tacgacaaggacgacgtggaggcgatcggcctggtcaagttcgacttcctgggcttggcg
accctgaccattctggaaattgcgcgcgagttcatcgtcaagcgccacaagggccaggaa
aagttcgcctacgaaaacattccgctcgacgacgccggcacctaccggctgtttgcagac
ggcaagaccgaggcggtgttccagttcgaatcccgtggcatgcagggcatgttgcgcgac
gccaagcccacgcgcctggaagacctgatcgccctgaacgcgctctatcggccgggtccg
atggacctgatccccagcttcgtggcgcgcaagcacgggcgcgaggtggtcgaatacccg
catccgatggtggccgagatgctgtcggaaacctacgggatcatggtctaccaggagcag
gtcatgcagaccgcccagatcctgggcggctactcgctgggcggcgccgacttgctgcgc
cgcgcgatgggcaagaagaagatcgaagaaatggcgatgcaccgcgagatcttccgaaag
ggagcggcggtcaacggcatttcgcaggaaaaggccgacgagatcttcgacctgatggag
aagttcgccggctacggcttcaacaagtcgcacgcggccgcttactcgctgctggcttat
cacaccggctggctgaaggtgcatttccgggcggagttctactgcgccaacatgacggtg
gaaatggacgacaccgacaagctgcgcgtgttgttcgaagacgcgcagaagctcggcatg
accttcgagccgccggacgtcaaccgcggcaactaccgcttcgagccggtcagcaacacg
gtcatccgttacggtctcggcgccgtcaagggcaccggccagtcggccatcgaggcggtg
gtggcggcgcgggaggagggcggtgcgttcaccagcctgttcgacttctgcaaccgggtc
gaccggcagcgcatcaacaagcgcacggtcgaggcgctgatcaaggccggcgccttcgac
tccatccagcagaaccgggcctcgctcgtcgcctccatcgaccgggccttcgaatacggc
gcggcgcaggcggccaacgtgcaccagggcggattgttcgacatggccgacgacggccat
ggttccagcacccaggagcccgacctcgtggccgcgcggccgtggggtatcaaggagcgg
ctggtcttcgagaagacggcggtcggtttctatctgtccggccatctgttcgacgaggtg
tcgcgcgaggtgcggcagttcgtgcggcgcgagatcggcgatctggtcgacagccgtgag
ccggtcacgctggcgggcatcatcaccgagctgcgggtgatcaacggccagcgtggcaag
ctggggttgatgaagctcgacgacaaatcgggcgtgatcgaggccactgccgacgaggcg
gtgctcaatgccaaccgcaatctgctcaaggacgacgagatggtcatcatcaccggcaag
ctgcaacccgaccggtttaccggcggcgtgcggctgaaggtggagcaggtgatggacctg
gccagtgcgcgttgccgcttcggcaagttcctacgcgtggcggtcaacggcaaggcgccc
gatattcagcgtatcgtgcgtgacttcccgccggtcaaggaagtgtccgagcacggcgaa
atcgtacgcgggctggaagttcggctggcggttcggcgcgaagcggggagcatggaagtg
ggtgttgacctcaagctcgacgagcgctcgcgtttcttcccgaccgatgccgccttgtcg
agctggatggcccaggccgaacagggaaaggccgtgatcgtgtatgaatga
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integrated database retrieval system
