Xylophilus sp. GOD-11R: R9X41_16550
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Entry
R9X41_16550 CDS
T09600
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03410
Base excision repair
xyg03430
Mismatch repair
xyg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
R9X41_16550 (recJ)
03430 Mismatch repair
R9X41_16550 (recJ)
03440 Homologous recombination
R9X41_16550 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xyg03400
]
R9X41_16550 (recJ)
DNA repair and recombination proteins [BR:
xyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
R9X41_16550 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
R9X41_16550 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R9X41_16550 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WPB55741
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Position
3572874..3574589
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AA seq
571 aa
AA seq
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MKIIDRDVPPRSAWALEQAGVHPLLARLYAARGVRHQDELDDGLARLLPPAGLLGAAQAA
VLLADAIRDDRRICIVADYDCDGATACAVAVRGLRLLGARHVDYLVPDRVVDGYGLTATI
AQRVAERGCDLLVTVDNGIASVEGVAFAQSLGLQVLVTDHHLPGPVLPTAEVLVNPNQPD
CGFDSKCIAGCGVMFYVLLALRAEQRQRGVYTEQPQPKLDALLPLVALGTVADVVKLDAN
NRRLVAQGLARIRRGAMQPGIAALFEAAGRKAPAATAFDFGFALGPRINAAGRLADMTLG
IECLLTEDRARADELARMLDTINRERRDIEGGMRDDAMAMAETLFAAGGLDSPPGAICVF
GADFHEGVVGIVASRLKDKLHRPTFVFAASAAPGKEMELKGSGRSIPGFHLRDALDLVAK
RHPGVLLKFGGHAMAAGCTIAREHFETFRDALAQVADEWLDEATLTRRLETDGPLAPEYR
RAEMIDTLHTAVWGQGFAAPTFAEEVQVVSQRLVGERHLQLKLLHQGQPVDGIWFGRTEV
LPARVRLAFRLDVNEWRGERKVQFLVEAAEL
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcatcgaccgcgacgtgccgccgcgcagcgcctgggcgctggagcaggccggc
gtgcatccgctgctggcgcggctctacgcggcgcgcggcgtgcgccaccaggacgaactc
gacgacggcctcgcccgcctgctgccgcccgccggcctgctcggcgcggcccaggccgcc
gtgctgctggccgacgccattcgcgacgaccggcgcatctgcatcgtggccgactacgac
tgcgacggcgccaccgcctgcgcggtcgcggtgcgcgggctgcgactgctcggcgcccgc
cacgtcgactacctggtacccgaccgcgtggtcgacggctacggcctcaccgccaccatc
gcccagcgcgtggccgagcgcggctgcgacctgctggtcaccgtcgacaacggcatcgcc
agcgtggaaggcgtggccttcgcgcaatcgctcggcctgcaggtgctggtcaccgaccac
catctgcccgggccggtgctgccgacggcagaagtgctggtcaacccgaaccagcccgac
tgcggcttcgacagcaagtgcatcgccggctgcggcgtcatgttctacgtgctgctggcg
ctgcgggccgagcaacgccagcgcggcgtgtacaccgagcaaccccaacccaaactcgac
gcgctgctgccgctggtggcgctgggcaccgtggccgacgtggtcaagctcgacgccaac
aaccgccggctcgtagcccagggcctggcgcgcatccggcgcggcgcgatgcagcccggc
atcgcggcattgttcgaggcggccggccgcaaggcgccggccgcgacggccttcgatttc
ggcttcgcgctcgggccgcgcatcaacgccgcgggtcgcctggccgacatgacgctgggc
atcgaatgcctgctcaccgaagaccgcgcccgcgccgacgaactcgcccgcatgctcgac
accatcaaccgcgaacggcgcgacatcgaaggcggcatgcgcgacgacgccatggccatg
gccgagacactgttcgccgccggcggcctggacagcccgccgggcgccatctgcgtgttc
ggtgcggacttccacgaaggcgtggtcggcatcgtcgcctcgcgcctgaaggacaagctg
caccggcccaccttcgtcttcgccgccagcgccgcgcccggcaaggagatggaactcaaa
ggctcgggccggtcgattccaggttttcacctgcgcgacgcgctcgacctggtcgccaag
cgacatccgggcgtgctgctcaagttcggcggccatgccatggcggcgggctgcaccatt
gcccgggagcacttcgagacgtttcgcgatgcgctcgcgcaggtcgccgacgaatggctg
gacgaagccacgctcacccgccgcctcgaaaccgacggcccgctggcgcccgaataccgg
cgcgccgagatgatcgacacgctgcacaccgccgtctggggccagggcttcgccgcgccc
accttcgccgaggaggtgcaggtggtgagccagcggctggtgggcgagcggcacctgcag
ctgaaactgctgcaccagggccagccggtggacggcatctggttcgggcgcaccgaggtg
ctgccggcacgggtgcgtctggcgttccggctcgacgtgaacgagtggcggggcgagcgg
aaggtgcagtttctggtggaggcggcggaactttga
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