Xylophilus sp. GOD-11R: R9X41_17985
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Entry
R9X41_17985 CDS
T09600
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R9X41_17985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xyg03019
]
R9X41_17985
03009 Ribosome biogenesis [BR:
xyg03009
]
R9X41_17985
Enzymes [BR:
xyg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
R9X41_17985
Messenger RNA biogenesis [BR:
xyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R9X41_17985
Ribosome biogenesis [BR:
xyg03009
]
Prokaryotic type
rRNA processing factors
R9X41_17985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
zf-C2HC_3
Motif
Other DBs
NCBI-ProteinID:
WPB56018
LinkDB
All DBs
Position
3874374..3877586
Genome browser
AA seq
1070 aa
AA seq
DB search
MKRMLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFAPGVSAGQARINEVIREGQELLVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKENMDQLEYPNGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAVEGASKGAKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIYEQAH
QFMAHVMPEHANRVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSI
DVNSARAIKGSDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRREVESR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPALSEGSSIPCPRCGGAGHIRDTESSALQ
TLRIIQEESMKDNTAAVHVQVPVEVASFLLNEKRNEITKIELKQRVNVMLVPNKSLDTPH
YKLERLKHDDPRLDSIQASYALAEEVEDPTTITRRSQEPTNRQTPVIKGVLPDAPAPQPV
ARPAAPVAQAPAPVAAPAPVAAPVEVGFWAWLKGLFNAEPAPAPAPVAAPAPAAAAAAAD
DRRGGRGGRRDARGEGRGENRGEGRSGRRDGRPGEGRGGEPRGERAGANGERTERSERTE
RGERPDRGERAERGERGETRAPRGGDRAERGDRPPREGGRPAGRGPRDAERLAPAPEAVA
DAAALGAVGPDAALVTEEPRRDEAPRRERGERGEGGRGRGRGSRGPRTEGQALPEDASAD
GALAPTTEAGVDAPADGNTAPAATPDGERPRRSRDRYGRERRDRNDRAERAPLDNGDTAQ
ASDAAEHAAPAQGGIFDAFRAPAPVAEPAEPANLTAPVDSDPVAPAPAARAPRPRRERSE
HGERGERGERALRQQEPSVSADALPAESAVAPVTEVAAPVVSPVEASVAATTAPTMSLTE
APALAVAPVPTPAPVEQAAPAPIAAPAPARFVLPVEELVKVAEGSGLQWVNSDSEKIAAA
QAAMAAEPQPIRVPRERPPAVVLDDGPLVLVETRRDLAAMKLPFEQQQQN
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaatgccacgcagtcggaagaacgacgcctggccatcgtcgac
ggacaaaagctcctcgactacgagatcgagatcgaagggcgcgaacagcgcaagggcaac
atctacaaggccgtcgtcacccgggtcgagccatcgctcgaagcctgtttcgtcgactac
ggcgaagaccgccacggtttcctgccgttcaaggaaatctcccgccagtatttcgccccc
ggcgtctccgccggccaggcccgcatcaacgaagtgatccgcgaaggccaggagctgctg
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctcaccaccttcatcagc
ctggccggccgctacgtggtgctcatgcccaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgaggatcgggccgagctcaaggaaaacatggaccagttggaatacccc
aacggcatgtccatcatcgcccgcaccgccggcatcggccgctcggcgcccgaactgcag
tgggacctgaactacctgctcaagctctggaccgccgtcgaaggcgcgtccaagggtgcc
aagggcgccttcctgatctaccaggaatccagcctcgtcatccgcgccatccgtgactac
ttcaatcacgacatcggcgacatcctgatagacaccgacgacatctacgagcaggcgcac
cagttcatggcgcacgtcatgcccgagcatgccaaccgggtcaagcgctaccgcgacgac
gccgcgctgttcagccgcttccagatcgagcaccagatcgaatcggcctacgcccgcacc
gtgcagctgccctcgggcggtgccatcgtcatcgaccacaccgaagcgctggtctcgatc
gacgtcaactccgcacgcgccatcaagggcagcgacatcgaggaaaccgccacccgcacc
aacctggaagctgccgacgaagtggcccgccagatgcgcctgcgcgacctcggcggcctg
atcgtcatcgacttcatcgacatggacgagagcaagaaccgtcgcgaggtggaaagccgc
ctgcgcgacgcgctccgccaggaccgtgcccgcgtgcagttcggcaccatcagcaagttc
ggcctcatggaaatgagtcgccagcgcctcaagcccgcgctgtctgaaggctcctccatt
ccctgcccgcgttgcggcggcgccggccatatccgcgacaccgaaagctccgcgctgcag
acgctgcggatcattcaggaagagtccatgaaggacaacaccgccgcggtccatgtgcag
gtcccggtcgaagtggcgtccttcctgctcaacgagaagcgcaacgaaatcaccaagatc
gagctcaagcagcgcgtcaatgtgatgctggtgcccaacaagtcgctcgacacaccgcac
tacaagctcgaacgcctcaagcacgacgatccgcgtctcgacagcatccaggccagctac
gcgctcgccgaggaagtcgaagacccgaccaccatcactcgccgctcgcaggagccgacc
aaccggcagacgccggtcatcaagggtgtgctgcccgatgcacccgcgccgcagccggtc
gcacgtcctgccgcgccggtggcgcaggcaccggcgcccgtggccgcgcccgcgccggtc
gcagcgccggtcgaagtcggtttctgggcctggctcaagggactgttcaacgccgagccg
gcaccggcgcccgcaccggtcgcagcgcctgcgccggcagcggctgcggctgcggccgac
gaccgtcgcggcggacgcggcggccgacgtgacgcacgcggcgaaggccgtggcgagaac
cggggcgaaggccgcagcggccgccgtgacggccgcccaggcgaaggccgcggtggcgag
ccgcgcggcgaacgtgccggcgccaatggagaacgcaccgagcgctcggaacggaccgaa
cgcggcgagcgtccggaccgtggcgaacgcgccgagcgtggtgaacgcggcgaaacccgt
gcaccccgtggcggcgatcgcgcagagcgcggtgatcgtccgccgcgcgaaggcggccgc
cctgccggccgtggcccgcgcgatgcggagcgcctggcgcccgcaccggaagctgtggcc
gacgccgcagccctcggcgcggtcggacccgacgccgccctggtgaccgaggaaccgcgc
cgcgacgaagcaccgcgtcgtgagcgtggcgaacgaggcgaaggcggccgtggacgcggc
cgtggctcgcgaggcccccgcaccgaaggccaggccctgccggaagacgcatcggccgat
ggcgctctcgccccgacgaccgaagccggtgtcgacgccccagcagacggcaacactgcc
ccggccgccacgccggacggcgaacgcccgcgtcgttcgcgtgaccgttatggccgcgaa
cgccgtgaccgcaacgaccgcgccgaacgcgcaccgctcgacaacggcgataccgcgcag
gcatccgatgccgccgagcacgcggcaccggcccagggcggcatcttcgatgcgttccgt
gccccggcaccggtcgccgagccggccgagcccgccaacctgacggcacccgtcgacagc
gatccggttgcaccggcgcccgccgcccgcgcaccgcgtccgcgtcgcgaacgctccgag
catggcgagcgaggtgaacgtggcgaacgcgcactgcgccagcaggaaccgtccgtcagc
gccgatgccctgccggccgaaagcgcggtcgcgccggtcaccgaagtcgcagcgcctgtc
gtgtctccggtcgaagcatcggtagccgcaacgactgcgccgacgatgtcgctgaccgaa
gccccggctctggccgtcgcaccggttcccactccggctccggtcgagcaggccgcaccc
gcgccgatcgccgcccccgcaccggcccgcttcgtcctgccggtcgaagagctggtcaag
gtcgccgaaggcagcggcctgcagtgggtcaactccgacagcgagaagatcgccgccgcg
caggccgccatggccgccgagccgcagccgatccgtgtgccgcgcgagcgcccgccggcg
gtcgtgctcgacgacggcccgctggtgctggtggaaacccgtcgtgacctcgccgccatg
aagctgccgttcgagcaacagcagcagaactaa
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