Xylophilus sp. GOD-11R: R9X41_18025
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Entry
R9X41_18025 CDS
T09600
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xyg
Xylophilus sp. GOD-11R
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xyg03032
]
R9X41_18025
03400 DNA repair and recombination proteins [BR:
xyg03400
]
R9X41_18025
Enzymes [BR:
xyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
R9X41_18025
DNA replication proteins [BR:
xyg03032
]
Prokaryotic type
DNA Topoisomerases
R9X41_18025
DNA repair and recombination proteins [BR:
xyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
R9X41_18025
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
ACOX_C_alpha1
Motif
Other DBs
NCBI-ProteinID:
WPB56026
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Position
complement(3884271..3885413)
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AA seq
380 aa
AA seq
DB search
MTLHASANASTSDASTVPAPAPLPGGLLYVSPLMPGMTRVRSGKRFAYRRVDGARVSDPE
EIRRIDSLAIPPAYSQVWICPLANGHLQATGLDARGRRQYRYHPQWRLLRDEGKFERIEA
FGRALPKIRARVARDLRVVRGKAPSRTVVLATLVRLLDTTYLRVGNEEYAESNGSYGLTT
LRSPHAGVRGSVLTLKFRGKSGVMQEVRLDDPKVARVVRGCQQLPGQELFQYEDEEGEPH
RLGSSEVNDYLREAAGQDFTAKDFRTWHGTVQALELTRLACGGHGEAAYSAKAVLAEVAR
QLGNTPAVCKKSYVHPAVLEVGSTLARGAESDLLGFWQRVTGKQKTPRRLHVAEHRLLGF
LREHRKNLRRELRRQVKKTA
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaccctgcacgccagcgccaacgcttccacttccgatgcttcgaccgtgccggctccc
gcgcctctgcccggcggcctgctgtatgtcagcccgctcatgccgggcatgacgcgggta
cggtcgggcaagcgtttcgcttatcggcgggtcgatggcgcgcgtgtctccgaccccgag
gaaatacgccgcatcgacagcctggcgataccgccggcctattcgcaggtgtggatctgc
ccgctggccaatggccatctgcaggccaccgggctggatgcgcggggtcgccgccaatat
cgctaccacccacagtggcggctgctgcgcgacgaaggaaagttcgagcgcatcgaggcc
ttcggccgggcgctgccgaagatccgcgcccgggtggcgcgcgacctgcgcgtggtgcgc
ggaaaggcgccgtcgcgcaccgtggtgctggccacgctggtgcggctgctcgacaccacc
tacctgcgcgtgggcaacgaggagtacgccgaaagcaacggctcctatggcctgacgacg
ctgcgttcgccgcacgccggcgtacgcggcagcgtgctgacgttgaagtttcgcggcaaa
agcggcgtgatgcaggaggtgcggctcgacgatcccaaggtggcgcgtgtggtgcgcggc
tgccagcaattgccgggccaggagctgttccagtacgaggacgaagagggcgagccgcat
cgtctcggctcgtccgaggtgaacgactatctgcgcgaggcggccggccaggatttcacc
gccaaggatttccgtacctggcacggcaccgtgcaggccctggagttgacccgactggcc
tgcggcggccatggggaggcggcttacagcgccaaggcggtgctggccgaggtggcgcgc
cagttgggcaacacgccggcggtctgcaagaagtcgtatgtgcacccggcggtgctggag
gtggggtccacgctggcgcggggcgcggagtccgacctgctcggcttctggcagcgcgtg
accggcaagcagaagacgccgcgccgcctgcacgtcgccgagcaccggctgctgggtttt
ctgcgcgaacaccgcaagaacttgcggcgcgaactgcgtcggcaggtcaagaaaacggct
tga
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