Xylophilus sp. GOD-11R: R9X41_18080
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Entry
R9X41_18080 CDS
T09600
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R9X41_18080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xyg03019
]
R9X41_18080
Enzymes [BR:
xyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R9X41_18080
Messenger RNA biogenesis [BR:
xyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R9X41_18080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
WPB56035
LinkDB
All DBs
Position
complement(3898935..3900413)
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AA seq
492 aa
AA seq
DB search
MTTSFSELKLAQPLARAVADMGYEHMTPIQAQAIPVVLEGRDVMGAAQTGTGKTAAFSLP
LLQRLMKHENASTSPARHPVRALVLLPTRELADQVAQQIKLYSKHTQMRCAVVFGGMDMK
PQTAELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKQRTTLLFSATFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVNEDDKRRAL
HQVLRQRGIRQAFVFVNSKLGCARLARSLEREGLRTAALHGDKSQDERLKALDAFKKGEV
DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVGLDSRND
ARLASDIEKLIAKKMELEPFEFEEERPRGRFNDGRRLYQQDGAVDESDGQRAQPERPRPR
SSGPARDPFFDRPYESAGDTPEPAWEAKAAAPVRGHSANIKPKRKVAMLFRPIPAPVAAP
APETADTEPERF
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgacgacatctttttcagaactgaagctggcccagccgctggcacgagccgtggccgat
atgggctacgagcacatgacacccatccaggcacaggcgatccccgtggtgcttgagggg
cgcgacgtgatgggcgcggcgcagaccggcaccggcaagacggcggctttctcgctgccg
ctgctgcagcggctgatgaagcacgagaacgcgtcgacctcgccggcgcggcacccggtg
cgcgcgctggtgttgttgcccactcgtgaactcgccgaccaggtcgcgcagcagatcaag
ctctacagcaagcacacccagatgcgctgcgcggtggtcttcggcggcatggacatgaag
ccgcagacggccgagctcaagaagggcgtcgaagtgctggtggctacgcccggccggctg
ctcgaccatatcgaagccaagaacgcggtgctcaaccaggtcgagtacgtggtgctcgac
gaggccgaccgcatgctggacatcggctttctgcccgacctgcagcgcatcctctcctac
ctgcccaagcagcgcaccacgctgctgttctcggccaccttctcgcctgagatcaagcgc
ctggcgtcgagctatctgcaggatccggtcacgattgaggtggcgcgctccaatgcgacg
gcatccaccgtagaacagcatttctacagcgtcaacgaagacgacaagcgccgcgccctg
caccaggtgctgcgccagcgtggcattcgccaggccttcgtcttcgtcaacagcaagctc
ggttgcgcgcggctggcgcgctcgctcgaacgcgaaggtttgcgcaccgcagccctgcac
ggcgacaagagccaggacgagcgactgaaggcgctcgacgccttcaagaagggtgaggtc
gacctgctcgtgtgtaccgacgtcgcggcccgtggcctcgacatcaaggacgtgccggcg
gtcttcaacttcgacgtgccgttcaacgccgaagactacgtccaccgtatcggccgtacc
ggtcgcgccggggcgtcgggtctggcggtgagcttcgtgggcctcgacagccgcaacgac
gctcgcctggcgtcggacatcgaaaagctcatcgccaagaagatggagctcgagcctttc
gagttcgaggaagagcgtccgcgcggccgcttcaacgacggccgtcgcctgtaccagcag
gacggtgcggtcgacgaatccgacggtcagcgcgcccagccggaacgcccgcgcccgcgc
agttcgggccccgcgcgcgacccgttcttcgaccgtccttacgagtccgccggcgacacc
ccggagccggcctgggaagccaaggccgccgctccggtgcgcggccattcggccaacatc
aagcccaagcgcaaggtcgcgatgctgttccgtccgatcccggcaccggtcgcggcacct
gccccggaaacagcggacaccgagcccgagcgtttctag
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