Xylophilus sp. GOD-11R: R9X41_18840
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Entry
R9X41_18840 CDS
T09600
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
xyg
Xylophilus sp. GOD-11R
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xyg03016
]
R9X41_18840
Enzymes [BR:
xyg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
R9X41_18840
Transfer RNA biogenesis [BR:
xyg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
R9X41_18840
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
ProQ_C
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
WPB56180
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All DBs
Position
4076924..4078999
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AA seq
691 aa
AA seq
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MYALFEEAGKFLAGRILSEAESSAQVELASGKRVKVKAANLLLKFEKPDPEKLLADARSL
AEGIELEMAYEFAPDEEFGFAELAQDYFSAAATITEQSAMLVKLFEAPHYFRRAGKGRFR
KAAPEIVQQALLAIERKKAQAQQIADWAEALAAGQAPQSIRDELYKILFKPDKNTSEYKA
VVEASRATQTAPLDLLRRAGAIASPYQFHWKRFLFDHFPKGIGFPGSLEAPPVTEELPLA
EGVAAFSIDDSQTTEIDDALSVQGLGSGSVTVGVHIAAPGLAFTPGGALDQVARQRLSTV
YMPGHKITMLPDAIVQTYTLGAGQARPAVSLYVTLDEATLAVTASETRLERVPVVANLRH
DRLDDTVTEQWLTDPASPPAAPAPEAEALRAEMSFLFRLARHLKAAREVVRGKPENFNRP
DYNFRLESDTDSEPVGDETVRITVRRRGAPLDLIVAEAMILANSTWGSWLGDLGVPGIYR
SQASMAPGVKVRMGTKALPHAGIGVPSYAWSTSPLRRYVDLVNQWQIIAAARHGRTAALA
APFKPKDAELFSIISSFDAAYSAYNGYQAAMERFWTLQYLRQNGIAELTASVIKEGPAGS
LLVRADELPLVLPVLGAQSLPRGARVRVKLGEIDDIALDVGGTVVERLDAAPVDEGDDAG
ADEEEAMAAGPIAIAVDVDDAQPQADAPAAA
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcattgttcgaagaagccggcaaatttctcgccggccgcatcctgtccgaagcc
gagtcgtccgcccaggtggagctcgcctcgggaaagcgggtcaaggtcaaggccgccaac
ctgctgctcaagttcgagaagcccgaccctgaaaagctgctggccgacgcccgctcgctg
gccgagggcatcgagctcgaaatggcctatgaattcgcgcccgacgaggaattcggcttc
gccgaactcgcgcaggactatttcagcgccgccgccaccatcaccgagcagtccgccatg
ctggtgaagctgttcgaggcgccgcactacttccgccgcgccggcaaaggccgtttccgc
aaagcggcgcccgagatcgtgcagcaggccctgctggccatcgaacgcaagaaggcgcag
gcccagcagatcgccgattgggccgaggcgctggccgccggccaggcgccgcagtcgatc
cgcgacgagctctacaagatcctcttcaagcccgacaagaacacgtccgagtacaaggcg
gtggtcgaagcctcccgcgccacccagaccgcaccgctcgacctgctgcgccgcgccggc
gccatcgcctcgccctaccagtttcactggaagcggttcctgttcgaccatttccccaag
ggcatcggctttccgggctcgctcgaagccccgccggttaccgaagagctgccgctggcc
gaaggcgtggccgccttctccatcgacgactcgcagaccaccgagatcgacgacgccctg
tcggtgcagggcctgggcagcggctcggtcaccgtcggcgtgcacatcgccgcgcccggg
ctggccttcacgcccggcggcgcgctggaccaggtggcgcgccaacgcttgtccaccgtc
tacatgccgggccacaagatcaccatgctgcccgacgccatcgtgcagacctacaccctg
ggcgcgggccaggcacggcccgccgtgtcgctttacgtcaccctggacgaggccacgctg
gcagtcaccgccagcgagactcgcctggaacgcgtgccggtggtcgccaacctgcgccac
gaccggctcgacgacaccgtcaccgagcaatggctgaccgacccggcctccccgcccgcc
gcgccggccccggaagccgaggcgctgcgtgcggagatgtccttcctgttccgcctggcg
cgccatctcaaggccgcacgcgaggtggtgcgcggcaagcccgagaacttcaaccggccc
gactacaacttccgtctcgaatcggacaccgacagcgaacccgtgggcgacgagacggtg
cgcatcaccgtgcgccgccgcggcgcaccgctcgacctgatcgtggccgaggcgatgatc
ctggccaacagcacctggggcagctggctcggcgacctgggcgtgccgggcatctaccgc
agccaggccagcatggcgccgggcgtgaaggtgcgcatgggcaccaaggcgctgccgcat
gccggcatcggcgtgccgagctatgcctggagcacctcgccgctgcgccgctacgtcgat
ctggtgaatcagtggcagatcatcgcggccgctcgccacggccgcaccgccgcgctggcc
gcacccttcaagcccaaggacgccgagctgttctccatcatctccagcttcgacgccgcc
tacagcgcctacaacggctaccaggccgccatggagcggttctggacgctgcagtacctg
cgtcagaacggtattgccgagctcaccgccagcgtcatcaaggaaggcccggccggcagc
ctgctggtacgcgccgacgagctgccgctggtgctgccggtactcggcgcgcagtcgctg
ccgcgcggtgcccgggtacgggtgaagctcggcgagatcgacgacatcgcgctcgacgtg
ggtggcaccgtggtcgagcggctcgacgcggcaccggtcgacgaaggcgacgatgccgga
gccgacgaggaagaagccatggccgccggccccatcgccatcgcggtggacgtggacgac
gcccagccgcaggccgacgcgcccgccgccgcctga
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