Xylophilus rhododendri: GT347_02695
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Entry
GT347_02695 CDS
T06383
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
xyk
Xylophilus rhododendri
Brite
KEGG Orthology (KO) [BR:
xyk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xyk03009
]
GT347_02695 (rimO)
Enzymes [BR:
xyk01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
GT347_02695 (rimO)
Ribosome biogenesis [BR:
xyk03009
]
Prokaryotic type
ribosomal protein modification factors
GT347_02695 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
CLP1_P
YajR_YAM
Motif
Other DBs
NCBI-ProteinID:
QHI96988
UniProt:
A0A857J215
LinkDB
All DBs
Position
complement(579421..580827)
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AA seq
468 aa
AA seq
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MSDVLSPQKTSAAAPPRVGFVSLGCPKALTDSELILTQLSAEGYQTSKTYEGADIVIVNT
CGFIDDAVRESLDTIGEALAGNGKVIVTGCLGARTGEGGENLVRKMHPSVLAVTGPHATQ
EVMDAVHLNLPKPHDPFIDLMPNSFGEAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRG
DLVSRPIGDVLKEARALFEGGVKELLVISQDTSAYGVDVKYRTGFYEGRPIRTRMLDLVQ
ALGEIAEPYGAWVRLHYVYPYPSVDEVIPLMAQGLALPYLDVPFQHSHPDVLRRMKRPAS
GEKNLERIERWREACPELVVRSTFIAGFPGETEQEFQHLLDFVQEAGIDRAGCFAYSAID
GAVANEIPGMLPIEVREERRSRFMAVAEQVSADRLRRRVGATMQVLVDSAPALGRKGGVG
RTYADAPEIDGVVRLLPPLKASKTLKVGEFTRASIVSTDGHDLVAQPI
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgtactctccccacagaaaacaagtgccgccgcgcccccgcgcgtcggcttc
gtgagccttggctgccccaaggcactcaccgattccgaactgatcctcacgcaactcagc
gccgagggctaccagacatccaagacctacgaaggcgccgacatcgtcatcgtcaacacc
tgcggcttcatcgacgatgccgtgcgtgaaagcctggacaccatcggcgaggccctggcc
ggcaacggcaaggtgatcgtcaccggctgcctgggcgcccgcaccggcgagggcggcgag
aacctggtgcgcaagatgcaccccagcgtgctggccgtcaccggcccgcacgccacgcag
gaggtgatggacgccgtccacctgaacctgcccaagccccacgatcccttcatcgacctg
atgccgaattccttcggcgaggccggcatcaagctcacgccgcggcactacgcctatctg
aagatcagcgaaggctgcaaccaccgctgcaccttctgcatcattccctcgatgcgcggc
gacctggtctcgcggccgatcggcgatgtgctcaaggaagcccgcgcgctgttcgagggc
ggcgtgaaggagctgctggtcatcagccaggacacctcggcctacggcgtggacgtgaag
taccgcaccggcttctacgaaggccgccccatccgcacccgcatgctcgacctggtgcag
gcactcggcgagatcgccgaaccctacggcgcctgggtgcggctgcattacgtctacccg
tacccgagcgtggacgaggtgatcccgctgatggcgcagggcctggccttgccctatctc
gatgtgcctttccagcacagccatcccgatgtgctgcgccgcatgaagcggccggccagc
ggcgagaagaacctggagcgcatcgagcgctggcgcgaggcctgcccggagctggtggtg
cgcagcaccttcatcgccggtttcccgggcgagaccgagcaagagttccagcacctgctc
gacttcgtgcaggaagccggcatcgaccgcgccggctgcttcgcctacagcgccatcgac
ggtgcggtcgccaacgagatccccggcatgctgccgatcgaagtgcgcgaggagcgccgc
tcgcgtttcatggcggtggccgagcaggtgtcggccgaccgcctgcgccgcagggtcggc
gccaccatgcaggtgctggtcgattccgcgcccgcgctgggccgcaagggcggcgtgggc
cgcacctatgcagacgcgccggagatcgacggcgtggtgcgcctgctgccgccgctgaag
gccagcaagaccttgaaggtgggggagttcacccgcgccagcatcgtctccaccgacgga
cacgacctggtggcccagcccatatga
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