Xylophilus rhododendri: GT347_02815
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Entry
GT347_02815 CDS
T06383
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xyk
Xylophilus rhododendri
Pathway
xyk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GT347_02815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xyk03400
]
GT347_02815 (mfd)
Enzymes [BR:
xyk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GT347_02815 (mfd)
DNA repair and recombination proteins [BR:
xyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GT347_02815 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QHI97010
UniProt:
A0A857IZH9
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All DBs
Position
603068..606526
Genome browser
AA seq
1152 aa
AA seq
DB search
MDLPRLVPGKRFTLPRPPGSADALLLGRLGLREAAAGRRTAIVTSDANDAQRLLEEIAFF
APTLRCALFPDWETLPYDTFSPHQDLISERLAALWRISQGEADVVLVPATTALYRVAPPA
FLAGYTFHFKVKQKLDEARLRAQLTLAGYSNVTQVVSPGEYAVRGGLIDLYPMGSAVPYR
VDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDDDARARFRSRWREMLEGDPTR
SRIYKDMGAGVATAGIEYYLPLFFDETATVFDYLGADATVVLHGDIEPAFQRFWQDTRDR
YRLVHGDSERPVLPPDALFLSADQFYTRANAHAQLALRSSDASHADERFERLPELSVVRG
AEDPLARFKAHAKTSAHRQLVLAESDGRRESLLDFLRASGVQPPAFDSLEAFQAAGDEKI
GIATAPLAAGFVWTGEAIDFITETELFAAGPTTRRRRRQEQVSDVESLIKDLAELKVGDP
IVHVQHGIGRYLGLVNLDLGQGDSEFLHLEYADKAALYVPVSQLHQVGRYTGVSADEAPL
HKLGSAQWDKAKRKAAEQVRDSAAELLNIYARRALRQGHAFRFSAADYEIFSNDFGFDET
PDQRAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQVALLAPTTLLA
EQHYQTLVDRFSKWPVKIAEMSRFRSAKEIAGAAKGLEDGQVDIVVGTHKLLSESVKFKN
LGLLIIDEEHRFGVRHKEQMKALRSEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQR
RLAIKTFVRSESNGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILPEARIAVAH
GQMPERELEKVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLAQLHQLRGR
VGRSHHQAYAYLMVPDIEGLTKQAQQRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGEN
QSGNMMEIGFQLYNEMLSEAVRSLKDGKEPDLLAPLSATTEINLHAPALLPEDYCGDVHL
RLSFYKKLATAKNADQIDRLLEEIVDRFGKLPPQAQTLIDVHRLRVLAKPYGVAKVDAAP
GVTNITFKPNPPIDPMRIIELIQKNRKVKLVGNEKLRIERELPDPKDRAQMVRDVLRSLG
QPLADTSAKTPA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggatctgccccgcctcgttcccggaaaacgcttcacgctgccgcgcccgccgggctcg
gccgacgcgctgctgctgggccggctcggcctgcgcgaagccgccgccgggcggcgcacc
gccatcgtcacctcggatgccaacgacgcccagcgcctgctcgaagagatcgccttcttc
gcgcccaccctgcgctgcgccctgttccccgactgggagaccctgccctacgacaccttc
tcgccccaccaggacctgatcagcgagcgcctggccgccctctggcgcatctcccagggc
gaggccgacgtggtgctggtgccggccaccaccgcgctctaccgcgtggcgccgcccgcc
ttcctggccggctacaccttccatttcaaggtcaagcagaaactcgacgaagcccggctg
cgcgcccagctcaccctggccggctacagcaacgtgacgcaggtggtcagccccggcgaa
tacgcggtgcgcggcggcctgatcgacctctaccccatgggctcggccgtgccctaccgc
gtggacctgttcgacgacgagatcgactcgatccgcaccttcgatcccgacacccagcgc
agcctctaccccgtgcccgaagtgcgcctgctgcccggccgcgagttcccgatggacgac
gatgcccgcgcgcgttttcgcagccgctggcgcgaaatgctcgaaggcgaccccacccgc
agccgcatctacaaggacatgggcgcgggcgtggccaccgccggcatcgagtactacctg
ccgctgttcttcgacgagaccgccaccgtcttcgactacctgggcgccgacgccaccgtg
gtgctgcacggcgacatcgaacccgccttccagcgcttctggcaggacacccgcgaccgc
taccgcctggtgcacggcgacagcgaacgcccggtgctgccgcccgatgccctcttcctg
agcgccgaccagttctacacgcgggccaatgcccatgcccagctggcgctgcgttcgtcc
gatgccagccatgccgacgaacgtttcgagcgcctgcccgagctgtcggttgtgcgcggc
gccgaagacccgctcgcccgcttcaaggcccacgccaagaccagcgcccaccgccagctg
gtgctggccgagagcgacggccggcgcgagagcctgctcgacttcctgcgcgccagcggc
gtgcagccgccggccttcgacagcctggaggccttccaggccgcgggcgacgagaagatc
ggcatcgccaccgccccgctggccgccggcttcgtctggaccggcgaggcgatcgacttc
atcaccgagaccgaacttttcgccgccggccccaccacccggcgccgtcgccggcaggag
caggtcagcgacgtcgagtccctcatcaaggacctggccgaactcaaggtgggcgacccc
atcgtgcatgtgcagcacggcatcggccgctacctgggcctggtcaacctcgacctgggc
cagggcgacagcgaattcctgcacctggaatatgccgacaaggccgcgctgtacgtgccg
gtgtcgcagctgcaccaggtcggccgctacaccggtgtgtcggccgacgaggcgccgctg
cacaagctgggcagcgcccagtgggacaaggccaaacgcaaagccgccgaacaggtgcgc
gactcggccgccgagctgctcaacatctacgcccgccgcgcgctgcgccagggccatgcc
ttccgtttctcggccgccgactacgagatcttctccaacgacttcggcttcgacgaaacc
ccggaccagcgcgccgccatccacgccgtggtgcaggacatgatttcgccccgccccatg
gaccgcctggtctgcggcgacgtgggtttcggcaagacggaagtcgccctgcgcgccgcc
ttcatcgccgtcaccggcggcaagcaggtcgccctgctggcgcccaccaccctgctggcc
gagcagcactaccagaccctggtggaccgcttctccaagtggccggtgaagatcgccgag
atgagccgcttccgctccgccaaggagatcgcgggcgccgccaaaggcctggaggacggc
caggtcgacatcgtcgtcggcacccacaagctgctcagcgaatcggtgaagttcaagaac
ctcggcctgctgatcatcgacgaggagcaccgcttcggcgtgcgccacaaggagcagatg
aaggccctgcgctccgaagtcgacgtgctcacgctgacggccacgcctatcccccgcacg
ctcggcatggcgctggaaggcctgcgcgacctgagcgtgatcgccaccgcgccgcagcgc
cgtctggccatcaagaccttcgtgcgcagcgagagcaacggcgtgatccgcgaggccgtg
ctgcgcgagctgaagcgcggcggccaggtctacttcctgcacaacgaggtcgagaccatc
gagaaccgccgccagaaactcgaggagatcctgcccgaggcccgcatcgccgtggcccac
ggccagatgcccgagcgcgagctggagaaggtgatgcgcgacttcgtcgcccagcgctac
aacctcctgctgtgctccaccatcatcgagaccggcatcgacgtgcctaccgccaacacc
atcgtgatgagccgcgccgacaagttcggcctggcccagctgcaccagctgcgcggccgg
gtgggccgcagccaccaccaggcctatgcctacctgatggtgccggacatcgagggcctg
accaagcaggcccagcagcggctcgaagccatccagcagatggaagaactcggttccggc
ttctacctggccatgcacgacctggagatccgcggcaccggcgaagtgctgggcgagaac
cagagcggcaacatgatggagatcggtttccagctctacaacgagatgctgtccgaggcg
gtgcgctcgctcaaggacggcaaggagcccgacctgctcgccccgctctcggccaccacc
gagatcaacctgcacgcccccgccctgctgcccgaggactactgcggcgatgtgcacctg
cgcctgtccttctacaagaagctggccaccgcgaagaacgccgaccagatcgaccgtctg
ctggaagagatcgtcgaccgcttcggcaagctgccgccgcaggcccagaccctgatcgac
gtgcaccgcctgcgggtgctggccaagccctacggcgtggccaaggtcgatgccgcgccg
ggcgtgaccaacatcactttcaagcccaacccgccgatcgatccgatgcgcatcatcgaa
ctcatccagaagaaccggaaggtcaagctggtgggcaacgagaagctgcgcatcgaacgc
gaattgcccgaccccaaggaccgcgcccagatggtccgggacgtgcttcgcagcctcggc
cagccgctggccgacacctccgccaaaacccccgcctga
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