Xylophilus rhododendri: GT347_03505
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Entry
GT347_03505 CDS
T06383
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
xyk
Xylophilus rhododendri
Brite
KEGG Orthology (KO) [BR:
xyk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xyk03009
]
GT347_03505 (rlmD)
Enzymes [BR:
xyk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GT347_03505 (rlmD)
Ribosome biogenesis [BR:
xyk03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GT347_03505 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
RrnaAD
Methyltransf_25
Methyltransf_31
TRAM
Methyltransf_11
TRM5-TYW2_MTfase
MTS
PCMT
Motif
Other DBs
NCBI-ProteinID:
QHI97125
UniProt:
A0A857J2N4
LinkDB
All DBs
Position
complement(734286..735836)
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AA seq
516 aa
AA seq
DB search
MTEDISRTEDGATAALPTRPADPLSPLFPGALAVESLDLEAQGVARRADGKVVFIEGALP
TEFVSFNVHRKKNNWEAASLVAVHRESSQRVRPGCPHFGLHPGACGGCKMQHLHAGAQVA
VKQRVLEDNLWHLGKTRPDMLLRPIEGPTWGYRWRARLSVRHVVKKGTVLIGFHERKSRY
IADMQVCPVLPPHVEALLMPLRGLIASMDARDTCPQIELACGDAVTALVLRHLEPLSADD
LQRLRGFAAEHADAGVQWWLQPKGPDTVQLLDADDARPLSYGLPEFGIEMPFKPTDFTQV
NPHINRVLVGRALRLLDVQKTERVIDWFCGLGNFTLPLATRARQVRGIEGSDTLVARARA
NYKRHQATGPALPLAPADFMARNLFSMTPELLLKDGVAEKWLVDPPREGAFALSRALTDL
CRQLAGLGPVGTGEAEAGEDSKNTNAPVDPALLAGWTPPRRIVYVSCNPATLARDAGLLV
HLGGYRCSAAGAVNMFPHTAHVESIAVFDYVGFGAE
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagacatctcccgcaccgaagacggtgcgacggcggctctccccacgaggccg
gccgatccgctttcccccctgtttcccggcgcgctcgccgtcgaatcgctggacctcgaa
gcccagggcgtggcccgccgcgccgatggcaaggtggtgttcatcgaaggcgcgctgccg
accgagttcgtcagcttcaatgtgcaccgcaagaagaacaactgggaggcggccagcctg
gtggcggtgcaccgcgaatcctcccagcgggtgcggccgggctgcccgcatttcggcctg
catccgggcgcctgcggcggctgcaagatgcagcatctgcacgccggcgcccaggtggcg
gtcaagcagcgggtgctggaggacaacctctggcacctgggcaagacccggcccgacatg
ctgctgcgccccatcgaaggccccacctggggctaccgctggcgcgcccggctgtcggtg
cgccatgtggtgaagaagggcacggtgctgatcggctttcacgagcgcaagagccgctac
atcgccgacatgcaggtctgcccggtgctgccgccgcatgtggaggcgctgctgatgccg
ctgcgcgggctgatcgcctcgatggacgcccgcgacacctgcccgcagatcgagctggcc
tgcggcgacgccgtcaccgcgctggtgctgcgccacctggagccgctgtccgccgacgac
ctgcagcgcctgcgcggcttcgcggccgaacatgccgatgccggcgtgcagtggtggctg
cagcccaagggtccggataccgtgcagctgctcgatgccgacgatgcgcgcccgctctcc
tacggcctgccggaattcggcatcgagatgcccttcaagccgaccgacttcacccaggtc
aacccgcacatcaaccgggtgctggtcggccgggcgctgcgcctgctggatgtgcagaag
accgaaagggtgatcgactggttctgcggcctgggcaacttcaccctgccgctggccacc
cgcgcccgccaggtgcgcggcatcgagggcagcgacacgctggtggcgcgggcgcgcgcc
aactacaagcgccaccaggcgaccggcccggcgctgccgctggcgccggcggacttcatg
gcgcgtaatctgttctccatgacacccgagctgctgctcaaggacggcgtggccgagaag
tggctggtcgatccgccgcgcgaaggggctttcgcgctctcacgcgcgctgacggacctg
tgccgccagctcgccggcctggggccggtgggcaccggcgaggccgaggcgggggaggac
agcaagaacaccaatgcgccggtcgatccggccttgctcgcgggctggacgccgccgcgg
cgcatcgtctacgtcagctgcaatccggcgacgctggcacgcgacgcgggcctgctggtg
cacctgggcggctaccgctgcagcgcggcgggggcggtgaacatgttcccgcacaccgcg
cacgtcgagagcatcgcggtgttcgactacgtgggtttcggcgccgaatag
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