Xylophilus rhododendri: GT347_08635
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Entry
GT347_08635 CDS
T06383
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xyk
Xylophilus rhododendri
Pathway
xyk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xyk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GT347_08635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xyk03019
]
GT347_08635
03009 Ribosome biogenesis [BR:
xyk03009
]
GT347_08635
Enzymes [BR:
xyk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GT347_08635
Messenger RNA biogenesis [BR:
xyk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GT347_08635
Ribosome biogenesis [BR:
xyk03009
]
Prokaryotic type
rRNA processing factors
GT347_08635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
zf-C2HC_3
Motif
Other DBs
NCBI-ProteinID:
QHI98055
UniProt:
A0A857J5E3
LinkDB
All DBs
Position
1882704..1885991
Genome browser
AA seq
1095 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFAPGVPAGQARINEVIREGQELLVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKENMDQLEYPNGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIEGASKGTKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIFEQAH
QFMAHVMPEHAGRVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSI
DVNSARAIKGSDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQ
TLRIIQEESMKDNTAAVHVQVPVEVASFLLNEKRNEITKIEMKQRVNVMLVPNKSLDTPH
YRLERLKHDDPRLDNIDASYKLADEIEDPTTITRRSQEPTNRQTPVIKGVLPDAPAPQPV
ARPAAPVAQAPVAAPAPAPVAAPAATPVEIGFWGWIKSLFAAPPAAAPAPVAAPAPAAAP
ADEQRRGGRGPRRDGRGEGRGEGRGEGRGEGRGGEGRGDGRGGRRDGRNGEGRSPEGRGD
RNEANGERAERSERTERGEARPPRGGERGERGERADRGERVERGERAERAPREGGRGGRP
PRDGERLAPAPEAVADAAALGAVGADAAVVTEAPRRERGERPEGGRGRGRGGRGPRSENG
EQGQAAGDEPRAEGNTAPVDNIDNGDGTNAPLTAEGERPRRSRDRYGRDQRRDRGERGER
APAEAGEAAAPDAGEHADSGQGGIFDAFRAPAPAAAEPQGAASAQPADAAEGEEAPAARP
PRARRERSDRGERSERGERSERGERAPQAAEPAVSTEALPLESAVAAPAPAAPAVSEPAP
AVYAEPVVAVATPVAAPAVAAAPAAPVAPVAEAAPAPVAAPAAPAVVAAPVAAPAATAFV
LPIDDLHQIAQGSGLQWVNSDSTKIAAAQAAMAAEPQPVRVPRERPPAVVLDEGPLVLVE
TRRDLADMKLPFEQR
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgttgatcaatgccacgcagccggaagaacgccgcctggccatcgtcgac
gggcagaagctcctcgactacgagatcgaaatcgaagggcgcgaacagcgcaagggcaac
atctacaaggccgttgtcacccgggtcgagccctcgctcgaagcctgtttcgtggactac
ggcgaagaccgccacggcttcctgccgttcaaggaaatctcccgccagtacttcgctccc
ggcgtgccggcaggccaggcgcgcatcaacgaagtgatccgcgaaggccaggagctgctc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggcgctcaccaccttcatcagc
ctggccggccgctacgtggtgctgatgcccaacaacccgcgcggcggcggcgtctcgcgc
cgcatcgagggcgaggaccgggccgagctcaaggagaacatggaccagttggaatacccc
aacggcatgtccatcatcgcgcgcaccgccggcatcggccgctcggcgcccgaactccag
tgggacctgaactacctgctcaagctctggaccgccatcgaaggcgcctccaagggcacc
aagggcgccttcctgatctaccaggaatccagcctcgtcatccgcgccatccgtgactac
ttcaatcacgacatcggcgacatcctgatcgacaccgacgacatcttcgagcaggcgcac
cagttcatggcgcacgtcatgcccgagcatgccggccgcgtgaagcgctaccgcgacgac
gccgccctgttcagccgcttccagatcgagcaccagatcgaatcggcctacgcccgcacc
gtgcagctgccctcgggcggcgccatcgtgatcgaccacaccgaggcgctggtctcgatc
gacgtcaactccgcgcgcgccatcaagggcagcgacatcgaggaaaccgccacccgcacc
aacctggaagccgccgacgaagtggcccgacagatgcgcctgcgcgacctcggcggcctg
atcgtcatcgacttcatcgacatggacgagagcaagaaccgccgcgaggtcgagaaccgc
ctgcgcgacgcgctgcggcaggaccgcgcgcgggtgcagttcggcacgatcagcaagttc
ggcctgatggaaatgagccgccagcgcctcaagcccgcgctgtccgaaggctcctccatc
ccctgcccgcgctgcggcggctccggccacatccgcgacacggaaagctcggccctgcag
acgctgcgcatcattcaggaagagtccatgaaggacaacaccgccgccgtgcacgtgcag
gtgccggtggaagtggcctccttcctgttgaacgagaagcgcaacgagatcaccaagatc
gagatgaagcagcgcgtcaacgtgatgctggtgcccaacaagtcgctggacaccccgcac
taccgcctggaacgcctgaagcacgacgacccgcgcctggacaacatcgacgccagctac
aagctcgccgacgagatcgaggacccgaccaccatcacccgccgctcgcaggagccgacc
aaccgccagacgccggtcatcaagggcgtgctgcccgatgcacccgcgccgcagccggtg
gcccggccggccgcgccggtggcgcaggcaccggtcgccgctccggcaccggcaccggtg
gcagcaccggccgcgacgccggtcgagatcggcttctggggctggatcaagagcctgttc
gccgcaccgccggccgcggcacccgcaccggtggcagcgcccgcgcccgccgcggcgcct
gccgacgagcagcgccgtggtggccgtggcccgcgtcgcgatggccgcggtgagggccgc
ggtgagggccgtggcgaaggccgcggtgaaggccgtggcggtgaaggccgcggcgacgga
cgtggcggacgccgcgacggtcgcaacggcgaaggccgcagccctgaaggccgcggcgac
cgcaacgaagccaacggcgaacgcgccgaacgcagcgagcgcaccgagcgtggcgaggcc
cgtcctccccgcggcggtgaacgtggtgaacgcggcgagcgtgcagaccgcggcgaacgc
gtggaacgtggcgaacgcgccgaacgcgctccccgtgaaggcggccgcggcggccgtccc
ccgcgtgacggcgaacgcctggcacccgcaccggaagccgtggcggacgcagccgccctg
ggtgccgtcggcgccgacgcagccgtcgtgaccgaagcgccccgccgtgaacgtggcgaa
cgccccgaaggcggccgtggccgcggacgcggcggccgtggcccgcgcagcgaaaacggc
gaacaagggcaagccgccggcgacgagccgcgtgccgaaggcaacaccgccccggtcgac
aacatcgacaacggcgacggcaccaacgccccgctgacggccgagggcgaacgcccccgc
cgttcgcgtgaccgttacggccgcgaccagcgccgtgaccgtggcgaacgcggcgagcgc
gctcccgcggaagccggcgaagccgctgcaccggatgccggcgaacatgccgactccggc
cagggcggcatcttcgatgccttccgtgcaccggccccggcagccgccgagccgcaaggc
gccgcatcggcccagccggccgacgcagccgaaggcgaggaagccccggcggcccgcccg
ccgcgtgcccgccgcgaacgttcggaccgtggtgagcgttcggaacgcggtgaacgcagc
gagcgtggcgaacgcgccccgcaagcggccgaacccgccgtcagcaccgaagcactgccg
ctggaaagcgccgtggccgcgccggctccggcagcgcctgccgtctccgagccggccccc
gccgtgtacgcggaaccggttgtggccgtcgccactccggtggcggcacctgccgttgct
gcggctccggctgcgccggtcgcaccggtcgcggaggccgcaccggctcccgtcgccgca
ccggcagccccggcggtcgtcgcagcgcccgtggcagccccggccgccacggccttcgtc
ctgccgatcgacgatctgcaccagatcgcccagggcagcggcctgcagtgggtcaactcc
gacagcaccaagatcgccgccgcccaggctgcgatggccgccgagccccagccggtccgc
gtgccgcgcgagcgcccgccggccgtggtgctggacgagggcccgctggtgctggtggaa
acccgccgcgacctcgccgacatgaagctgcctttcgagcagcgctga
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