Xylophilus rhododendri: GT347_18160
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Entry
GT347_18160 CDS
T06383
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
xyk
Xylophilus rhododendri
Pathway
xyk00300
Lysine biosynthesis
xyk00470
D-Amino acid metabolism
xyk01100
Metabolic pathways
xyk01110
Biosynthesis of secondary metabolites
xyk01120
Microbial metabolism in diverse environments
xyk01230
Biosynthesis of amino acids
Module
xyk_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
xyk00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
GT347_18160 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
GT347_18160 (dapF)
Enzymes [BR:
xyk01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
GT347_18160 (dapF)
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GFIT
Motif
Pfam:
DAP_epimerase
Ig_CNNM4_N
Motif
Other DBs
NCBI-ProteinID:
QHI99731
UniProt:
A0A857J9E6
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Position
3925079..3925972
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AA seq
297 aa
AA seq
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MQIPFTKMQGAGNDFVVLDETRGLLGLSPAQIRFLADRHFGVGADQVLSVRPSPAPGIDF
EYVIFNADGGEVEQCGNGARCFVRYVVEHGLTGRDAIRVQTKGGVIEPRLDADGRVTVDM
GAPVFDAGLVPFDVAGISAQADGGWQLWPLALGSEAGDPVAHVAVLSMGNPHAVWVVDDV
DAAPVAAMGPRIERHPRFPQRVNAGFMQVLDRSHIRLRVYERGAGETLACGTGACAAVVA
GIRLGLLDSRVDVQTRGGTLTISWAGGDSAVSMTGPAVTVFEGRIDVPDSIPSVLNP
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgcagattccgttcaccaagatgcagggcgccggcaacgacttcgtcgtgctcgacgag
acccgcggcctgctgggcctgtcgcccgcacagatccgtttcctggccgaccgccatttc
ggcgtcggcgccgaccaggtgctgtcggtgcggccatcgcccgcgccgggcatcgacttc
gaatacgtcatcttcaacgccgacggcggcgaggtggagcagtgcggcaacggcgcgcgc
tgcttcgtgcgctacgtggtcgaacacggcctgaccgggcgcgacgcgatccgggtgcag
accaaggggggcgtgatcgagccccggctcgatgccgacgggcgcgtcaccgtggacatg
ggcgcgcccgtgttcgacgccggcctggtgcctttcgatgtggccggcatttccgcgcaa
gccgacggtggctggcagctctggccgctggcgctgggcagcgaggcgggcgatccggtg
gcgcatgtggcggtgctctccatgggcaatccgcatgcggtctgggtggtcgacgacgtc
gatgccgccccggtcgccgcgatggggccgcgcatcgaacgccatccgcgctttccgcag
cgggtcaacgccggtttcatgcaggtgctggaccgctcgcacatccgcctgcgggtatat
gaacgcggcgccggcgagacgctggcctgcggcaccggcgcctgtgcggcggtggtggcc
ggcatccggctcggcctgctcgacagccgggtggatgtgcaaacccgcggcggcacactc
accatctcctgggccggcggcgattccgccgtctccatgaccggcccggccgtcaccgtc
ttcgagggccgcatcgacgtgcccgattcgatcccctccgttctgaacccatga
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