Xylophilus rhododendri: GT347_24390
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Entry
GT347_24390 CDS
T06383
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
xyk
Xylophilus rhododendri
Pathway
xyk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
GT347_24390 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xyk03400
]
GT347_24390 (sbcB)
Enzymes [BR:
xyk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
GT347_24390 (sbcB)
DNA repair and recombination proteins [BR:
xyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
GT347_24390 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GT347_24390 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GT347_24390 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
LEDGF
Motif
Other DBs
NCBI-ProteinID:
QHJ00850
UniProt:
A0A857JCM4
LinkDB
All DBs
Position
5280593..5282059
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AA seq
488 aa
AA seq
DB search
MTDITFLWHDYETFGTNPRRDRPSQFAAIRTDAELREIGEPLMVYCRQTDDYLPDPQSCL
ITGIVPQTCMERGIAEIEFAGRIEAAFSVPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYA
REWQNGCGRWDLLDVVRLAYALRPEGMEWPLKPDGKPSFRLEDLTRANGLVHEAAHDALS
DVRATIALARLLREKNPRLFDFALGLRAKDRVAQELGLPTTAQTARPFLHVSGMFAAERG
CLAVMWPLAIHPTNRNEVLAWDLSQDPAILATLGIEEIRQRLFTRAADLPEGMSRLSLKS
VHLNKSPMVVGNLRTLRPEMAQRWQLDLEQAALHAQAAAALPDMSAIWQEVFKRPASEPA
DVEEDLYGGFVGNNDRRKLGQLRGMSPGQLASARTGFEDARLEEIVFRFRARNYPDSLTE
EEGARWQEHRAARLFEGVGGARTVDDYLAALDVLGEQASEAEDGPDERTETILSALYDYA
EAVVPERD
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacatcacttttctctggcacgactacgaaaccttcggcaccaatccgcgccgc
gaccggccctcgcaattcgccgccattcgaaccgatgccgaactgcgtgaaatcggcgaa
cccttgatggtgtattgccggcagaccgacgattacctgcccgatccgcaaagctgcctg
atcaccggcatcgtgccgcagacctgcatggagcggggcattgccgaaatcgaattcgca
ggccggatcgaagccgctttctcggtgcccggcaccatcggcgtgggctacaacaccatc
cgcttcgacgacgaagtcacgcgttttcttttctggcgcaacctcatcgatccctacgcc
cgcgaatggcagaacgggtgtggccgctgggatctgctcgacgtggtgcgtctggcctac
gccctgcgaccggagggcatggaatggcccttgaagcctgacggcaaacccagttttcgc
ctggaagacctcacccgggccaacggcctggttcatgaggccgcgcacgatgccttgtcc
gacgtcagggcgacgatcgcgctggcccggctgctgcgcgaaaagaacccgcgcctcttc
gacttcgcgcttggcttgcgcgccaaggaccgggtcgcccaggaactcggcctgcccacc
actgcgcagacggctcggccttttctgcacgtctcgggcatgtttgcagctgagcgcggc
tgcctcgcggtcatgtggccgctggcgatccatccgacgaaccgcaacgaagtgcttgcc
tgggatctgtcgcaggatccagccatcctggcaacgctgggaatcgaggagatccgccag
cgccttttcacccgcgcggccgacctgccagaaggcatgagccgtctgtcgctcaaaagc
gtgcacctgaacaaatccccgatggtggtcggcaacctgcgcaccctgcggcccgaaatg
gcacagcgctggcagctggacctggagcaggcggcgctgcatgcgcaggcggctgccgcc
ttgcccgacatgagtgcgatctggcaggaggtgttcaagcgcccggccagcgagccggcc
gacgtggaagaagacctgtacggtggttttgtcggcaacaacgaccgccgcaagctcggc
cagttgcgtgggatgtcgcccggccagctggcctccgcccgcacgggtttcgaagacgcc
cgcctggaggaaatcgtcttccgcttccgcgcacgcaattacccggactccctgaccgag
gaggagggtgcacgctggcaggaacaccgcgccgcgcggcttttcgaaggcgttggcgga
gcgcgcaccgtcgatgactacctcgccgccctggatgtgctgggcgagcaggccagcgaa
gcagaagacggccccgacgagcgcaccgaaaccattctctcggcgctttacgattacgcc
gaagccgtcgtgcccgagcgcgactga
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