Yoonia algicola: AABB28_10915
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Entry
AABB28_10915 CDS
T10512
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
yag Yoonia algicola
Pathway
yag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AABB28_10915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yag03019
]
AABB28_10915
Enzymes [BR:
yag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AABB28_10915
Messenger RNA biogenesis [BR:
yag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AABB28_10915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
WZU62411
UniProt:
A0AAN0M6B4
LinkDB
All DBs
Position
complement(2146079..2147389)
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AA seq
436 aa
AA seq
DB search
MDFDMLGLAPRLVNVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGSGKTAAFGLPMI
HALLKAGVKPNPKTTRGLILAPTRELAKQISDNLTAYTKGSHLKVALVVGGAGIVAQTKR
LAGGVDLLVATPGRLIDLLDRRAVRLDETIYLVLDEADQMLDMGFIHALRRIAPLLAKDR
QTMMFSATMPKLMGELAGTYLTDAVRVQVNPPGQAVKKINQSVHFVAQAAKTDLLVELLD
KHRDELAIVFGRTKHGCEKLYKVLEKKGFAAASIHGNKSQGQRQRALDAFKAGKTRVLVA
TDVAARGLDIPDVRFVYNYDLPNVAENYVHRIGRTARAGADGSAVALVAPDEMIELQDIE
KAMKDTIPVATGRPWEIQPGQKKRPNGGGGGGRRGAGGGQRSGAPRAAGKPAGGQGKPAG
RRRNGGGGQNRGKSAA
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggattttgatatgctgggccttgcgccccgtcttgtaaacgttctcaaagaacaaggg
attaccgatcccacccccattcagacccaagcgatcccgcacgccatgaatggccgcgat
gtgatgggccttgcgcagaccggtagcggtaaaaccgcagcctttggtctgccgatgatt
catgcgctgttgaaggctggcgtaaagccgaaccccaaaacgacccgcggtctgatcctc
gcgccgacgcgtgaactggccaaacagatttccgataacctgaccgcctataccaaaggc
agccacctgaaagtggcgcttgttgttggtggtgctggcatcgtggcccagaccaagcgt
ctggctggcggtgttgatttgctggttgcaacgcccggtcgtttgatcgacctgctggac
cggcgcgctgtgcgtctggatgaaaccatctatctggtgctggatgaggccgaccagatg
ctcgatatgggctttatccacgcgctgcgccggatcgcaccactgctggccaaagatcgc
cagaccatgatgttctcggccacgatgccgaaactgatgggagagttggcagggacctat
ctgacggacgccgtgcgcgtgcaggtgaaccccccggggcaggctgtgaaaaagatcaac
caatcggttcactttgtggcgcaggcggcgaagaccgatctgctggtcgaactgctggat
aagcaccgcgacgagttggcgattgtctttggacgcaccaaacatggatgcgagaagctc
tataaagtgcttgagaaaaagggatttgctgcggcatctattcacggcaacaaatcccaa
ggccagcgccaacgtgcgcttgatgcgttcaaggcaggcaagacccgcgtcttggttgca
acggatgttgcagcgcgcggtctggatattcccgacgtgcggttcgtctataactacgac
ctgccgaatgtggccgaaaactatgttcaccggattggtcgtacggcgcgtgcgggtgcc
gatggtagcgcggtcgcactggtcgctccggatgaaatgattgaattgcaggatatcgaa
aaagcgatgaaggatacgatcccagtcgccactggtcgtccttgggaaatccagccaggc
cagaaaaagcggcccaacggcggtggcggcggcggtcgtcgtggtgccggtggtggacag
cggtctggcgcaccccgtgccgcaggcaaacccgcaggtggccaaggcaaacctgccggt
cggcgtcgcaatggcggtggtggccagaatcgcggaaaatctgccgcctag
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