Yoonia algicola: AABB28_17590
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Entry
AABB28_17590 CDS
T10512
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
yag Yoonia algicola
Pathway
yag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AABB28_17590 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yag03021
]
AABB28_17590 (rpoC)
03400 DNA repair and recombination proteins [BR:
yag03400
]
AABB28_17590 (rpoC)
Enzymes [BR:
yag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AABB28_17590 (rpoC)
Transcription machinery [BR:
yag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AABB28_17590 (rpoC)
DNA repair and recombination proteins [BR:
yag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AABB28_17590 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
DUF7567
Motif
Other DBs
NCBI-ProteinID:
WZU63618
UniProt:
A0AAN0MFF8
LinkDB
All DBs
Position
3471476..3475726
Genome browser
AA seq
1416 aa
AA seq
DB search
MNQELTNNPFNPLTPAKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLMTEEEFNDAQDLYGMDAFQ
ANIGAEAIREMLAQIDLESEAETLRADLKEATGELKPKKIIKRLKIVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTIMRHGMKGEGMSFSDIEEVEHAL
TAGEVHLHAKITARMVQIDDEGNEVMTRFETTPGRLRLGALLPLNAKAPFALVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVVPDTKWELVDETRE
QVKDFEQQYMDGLITQGEKYNKVVDAWSKANDKVTDAMMTTISTTPLLADGAEGEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVREVDCGTERAITAEAAVNDGEVVASLAERVLGRV
SADDVIKPGTDEVIVEAGELIDERKADMIDMAAIGKMRIRSPLTCESEDGVCAMCYGRDL
ARGTRVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQPGKIEYRNAQ
LLENAAGEMVVMGRNMVLAIVGEEGEERATHKVGYGSKVFVKEGASVLRGDKLFEWDPYT
LPIIAEASGTAKYVDLVNGIAVREDTDDATGMTQRIVSDWRAAPKGNELAPKIIVLGKDG
EVVLKEDGNPVAYPMSVDAVLSVEDGEEIKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIESADDADVKVEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILAVMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IQDSGDTVLLKGENVDKAEFDEANAKAIARGDRPATGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLIGLKENVIVGRLIPAGTGGATQQVRRVAADRDNVVIEARRE
EAEEAARLAAPVEMPAQSEEDQVFGTAPKASEGDDA
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgtttaacccgctcacaccggcaaaaacatttgac
gaaatcaaggtgtcgctggcatcgcccgagcggatcctgtcgtggtccttcggcgagatc
aaaaagcccgagaccatcaactaccgtacgttcaagccagagcgcgacggtctgttctgt
gcacgtatctttggcccgatcaaagactacgaatgcctctgcggcaaatataagcgcatg
aaatatcgcggcgttgtctgcgaaaaatgcggtgtggaagtcaccctgcaaaaggtccgc
cgcgagcggatgggccatatcgaactggccgcaccagtggcgcacatttggttcctcaag
tcgctgccatcccgcatcggcctgatgctggacatgacgctgcgcgatcttgagcgcatc
ctgtacttcgaaaactacgtcgtgatcgaacccggcctgactgacctgacctacggccag
ttgatgactgaggaagagttcaacgacgcgcaagacctgtatggcatggacgcgttccag
gccaatatcggtgccgaagcgatccgcgaaatgctggcccagattgatctggagtccgag
gcagagacactgcgcgctgacctcaaagaggcgacaggcgaattgaagcccaagaagatc
atcaagcgtttgaagatcgtcgagagcttccttgaaagcggcaaccgccccgagtggatg
gttctgaccgtgatccctgtgatcccgccagaactgcgcccgctggtcccgcttgatggc
ggccgtttcgcgacgtccgacctcaacgatctttatcgtcgtgtgatcaaccgcaacaac
cgtctgaagcgtctgatcgaattgcgcgcacctgacatcatcgtgcgcaacgaaaagcgg
atgctgcaggaatctgttgatgcgctgttcgacaacggccgtcgtggccgcgtgatcacg
ggtgccaacaagcgcccgctgaaatcgctgtccgatatgctgaagggtaagcagggtcgc
ttccgtcagaaccttttgggcaagcgcgtcgacttctcgggtcgttcggtcatcgtgacc
ggtccggaactcaaactgcaccagtgtggtctgccgaaaaagatggcgctcgagctgttc
aagccgttcatctattcgcgtcttgaagcaaagggtctgtcttccacagtgaagcaagcc
aagaaattggtcgaaaaagagcgtcctgaagtttgggatatccttgatgaggtaatccgc
gaacaccctgtcatgctgaaccgtgcgccaacgctgcaccgtttgggcattcaggcgttt
gaacctgtcctgatcgaaggcaaagcgatccagctgcacccgctggtctgttctgcgttc
aacgccgactttgacggtgaccaaatggcggttcacgtcccgctgagccttgaggcccag
ttggaagcccgcgttctgatgatgtcgacaaacaacgtgctgtcgcctgcgaacggtgcg
ccaatcatcgtgccgtcacaggatatgatccttggtctctactacaccaccatcatgcgt
cacggcatgaagggcgagggcatgtcattctcggatattgaggaagtcgagcacgcgctg
accgcgggtgaagtgcatctgcacgccaagatcacggcgcggatggtgcagatcgacgac
gaaggcaacgaagtgatgacgcggtttgagaccacaccgggccgtttgcgtctgggtgcg
ttgctgccgctcaatgccaaggcgccgtttgcgctggtcaaccgtctgctgcgcaagaaa
gaagtgcagcaggtcatcgacaccgtctaccgctactgtggtcagaaagaatctgtcatc
ttctgtgaccagatcatgaccatgggcttccgcgaagcgttcaaggcaggcatctcgttc
ggtaaggacgatatggttgttcccgataccaagtgggaactggtcgacgagacacgcgag
caggtcaaagactttgaacagcagtacatggacggcctgattacacagggcgaaaagtac
aacaaagttgtcgatgcctggtcaaaggccaacgacaaagtcaccgacgcgatgatgacc
acgatctcgaccacaccgctcttggcggatggtgccgaaggtgagccgaactcggtttac
atgatggcccactccggtgcgcgtggttcggtcacacagatgaagcagctgggcggtatg
cgcggcctgatggccaagccgaacggcgagatcatcgaaacgccgatcatctcgaacttt
aaggaaggtctgaccgttcttgagtacttcaactcgacccacggtgcccgtaagggtctg
tcggacacggcgttgaagactgcgaactcgggttacctgacacgtcgtctggtggacgtc
gcccaagactgcatcgtccgtgaggtcgattgcggaacagagcgtgcgatcaccgcagaa
gccgccgtcaacgatggtgaagtcgttgcatcactggccgagcgcgtgctgggtcgtgtg
tctgcggatgacgttatcaagccgggtacggacgaagtgatcgtcgaagcaggcgaactg
atcgacgaacgtaaggccgacatgatcgacatggccgcgattggcaaaatgcgtatccgc
agcccgctaacctgtgaaagcgaagatggcgtttgtgcgatgtgctatggccgtgacttg
gcccgcggtacccgtgtgaacatcggcgaagctgttggtatcattgcggcacagtccatc
ggtgaacctggtacacagctgacaatgcggacgttccacattggtggtgttgctcaaggt
ggccagcagtcgttcctcgaggcctcacagcctggtaagatcgaataccgtaatgctcag
ctgcttgagaacgcagctggcgaaatggttgtgatgggccggaacatggttctcgcgatt
gtcggtgaagagggcgaagagcgtgcgacccacaaggttggctatggctccaaagtgttc
gtcaaagagggtgcatctgtactgcgcggcgacaagctctttgaatgggatccctataca
cttccaatcatcgccgaggcctctggtacagccaaatacgttgatctggtgaacggtatt
gcagtccgtgaagacaccgacgatgccacgggtatgacccagcgcatcgtgtctgactgg
cgtgcggcaccgaaaggcaatgagcttgctccgaagatcatcgttctgggtaaggatggc
gaagttgtcctcaaagaggatggcaaccctgtcgcttatccgatgtctgtggatgcggtt
ctgtccgttgaagacggcgaagagatcaaagcgggtgatgttgtcgcgcgtatcccacgt
gagggtgccaagaccaaagacattaccggtggtctgccacgtgtggccgaactgttcgaa
gcccgtcgtccgaaggatcacgcaatcatcgctgaaatcgatggctacgtgcgctttggc
aaggactataagaacaagcgccgcatcgcgattgaatctgcggatgatgcagacgtaaag
gtcgaatacatggtgcccaagggcaagcacattccggttgcggaaggtgactttgtccag
aagggtgactacatcatggatggcaacccagccccacacgatattcttgcggttatgggg
gtcgaggcccttgcagactatatgatcgacgaagtgcaggacgtgtaccgcctgcagggt
gtgaagatcaacgacaagcacatcgaagttatcgtgcgccagatgctccagaagtgggag
attcaggacagtggtgacaccgttctgctgaaaggcgagaacgtcgataaggctgagttt
gatgaagccaacgcaaaggccattgcgcggggcgaccgccctgcgacaggcgagccgatc
ttgctgggtatcaccaaagcgtcgttgcagacccgttcgttcatctctgcggcatcgttc
caggaaacgacacgcgtgctgacagaggcgtccgtgcaaggtaagcgcgacaagctgatc
ggtctgaaagagaacgtcatcgtgggccgtctgatcccggccggtaccggtggtgcgaca
cagcaggtgcgccgtgttgctgcagatcgtgacaacgtcgtgatcgaagcgcgccgcgaa
gaggccgaggaggcagcacgtcttgcggcccccgtggagatgccagcgcagtccgaagaa
gatcaagtgtttggcactgcgcccaaagcgtctgaaggcgacgacgcgtaa
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integrated database retrieval system
