Yersinia aleksiciae: ACZ76_17005
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Entry
ACZ76_17005 CDS
T03994
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
yak
Yersinia aleksiciae
Pathway
yak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACZ76_17005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yak03019
]
ACZ76_17005
03009 Ribosome biogenesis [BR:
yak03009
]
ACZ76_17005
Enzymes [BR:
yak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACZ76_17005
Messenger RNA biogenesis [BR:
yak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACZ76_17005
Ribosome biogenesis [BR:
yak03009
]
Prokaryotic type
rRNA processing factors
ACZ76_17005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AKP35096
LinkDB
All DBs
Position
complement(3808254..3811673)
Genome browser
AA seq
1139 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPQEEATIERKRPEQPALATFSLPTEVPP
ESAPAAASVKPTAAPQVAASASAEQPGFFSRLLTGLKGIFATPAEAEVKPVEVEKTEASE
TRRNDRRNPRRQNNGRKDRGDRTPREGRDNASRDNNGRDNANRDNNARDNNGRDTANREG
REDQRRNNKRPTQQTAVAQASTDIVEADKEQREEQPQRRGDRQRRRQDDKRQAPQDVKAN
VDVPAVSADDAQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNAQESTAPVAPASVPVA
AFATPVVQEEVKLLPQATAQADDDATNDRNANNENGMPRRSRRSPRHLRVSGQRRRRYRD
ERYPTQSAMPLAGAFASPEMASGKVWVRYPVAQPFEQAAFVENPVEEQLLTEVAAVEVAV
VEAPAVEAASVEVAVNVPAAIIAAPVVVAAVTETVAPASASQHKPGGSSSSVAAVPGRAP
VVVPEVIAEPVAEEVVTETETIAAIEATPVVDEAIAPAAAIEDTIVPEIQAEETLVAETA
VEETVIAEEPVVVEESVEVLRVTETEVIVEETAAEEVHVTEAVAAVQQQPDVAHPEGVLF
KHYASAPMTKAPAPDYAPESQTKGNWERPAFDFAGKGSAGGHAAATQATAPATKPQSVE
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggctgtatgatttggatattgaaagtccaggccatgaacagaaaaaagcgaat
atttacaaaggtaaaatcacccgaatcgaacccagtctggaagccgcttttgttgattac
ggcgctgaacgacatggtttcctcccactaaaagaaatttctcgcgaatatttccctagt
aattactcttcccatggccgcccgaacatcaaagatgtgctgcgcgaaggccaagaagtt
attgttcaggttgataaagaagaacgtggcaataaaggtgccgcactcacgactttcatc
agcttggctggcagctatttagttctgatgccaaacaacccgcgagccggtggtatttct
cgccgcatcgagggtgatgaccgcaccgaactgaaggaagccctatcctctctgcaattg
cctgatggcatgggtctgattgtccgtactgcgggtgttggcaaatctgctgatgcactg
caatgggatttgtcattccgcctgaagcactgggatgcgattaaaaaagctgcggaaggt
cgccctgcgccgttcctgatccatcaggaaagtaacgtgattgtccgtgctttccgtgat
tatctgcgcccagacatcggcgaaattctgatcgacaacccgaaagttctcgagttggcg
aaagagcatatcgccgcgttaggtcgcccggatttcagcagcaagatcaagctctatagt
ggtgaaatcccactattcagccactaccagattgagtcacaaattgagtctgccttccaa
cgcgaagtgcgtctgccatcgggtggttctatcgttatcgacaccaccgaagccctgacc
gcgattgatatcaactccgcacgggcgactcgtggtggtgatatcgaagaaaccgccttc
aataccaaccttgaagccgctgatgaaattgcccgtcagttacgtttacgtgacttgggt
ggcctgattgttatcgacttcatcgatatgaccccagtgcgtcatcaacgtgaagtagaa
aaccgtttacgtgatgccgtccgccaggaccgcgcccgtatccagattggccgcatctca
cgctttggtttgctggaaatgtcccgtcagcgtctcagcccatcattgggtgagtcaagc
caccacgtgtgcccacgctgtagcggcaccggtacagtgcgtgataacgaatccctgtca
ctctctattctgcgtttgattgaagaagaagcgctgaaagagaacacccatgaagttcac
gccatcgtgccggtacagatcgcttcgtacctgctaaacgaaaaacgtgaatcagtgaac
gccattgagaaacgtcaaggcggtgtgcgtgcggtgatcgtgccaaacgatcagatgcaa
acaccacactactctgtccttcgggtacgtaaaggcgaagaagttccttcccttagctac
ctgttgccacaactgcacgaagcagaaatggcacagccgcaagaagaagccactattgag
cgtaagcgcccagagcaacccgcgctggcgactttctctttaccgactgaagtgccacca
gaatcagcacctgctgctgccagtgttaaacccactgctgcaccacaagttgcggcttct
gccagcgctgaacaaccgggcttcttcagccgcctgctcacgggtctgaaaggcatcttc
gccacaccagcagaagccgaagttaaaccggttgaagttgaaaaaaccgaagctagcgaa
acgcgtcgtaatgatcgccgcaatccacgccgccaaaacaatggccgtaaagatcgcggt
gaccgtacaccacgcgaaggtcgtgataacgctagccgtgacaataatggtcgtgataac
gcgaaccgtgacaacaatgctcgtgacaacaatggccgcgacactgccaatcgcgaaggt
cgtgaagatcaacgccgcaataataagcgtccaactcaacaaactgctgtagcgcaagca
tcaactgacattgttgaagccgataaagagcagcgcgaagagcagccgcaacgtcgtggt
gatcgccagcgtcgtcgtcaggacgacaaacgtcaggcgccgcaggatgttaaagctaac
gttgatgtccctgcagtcagtgccgatgatgcacaacctgagcaagaagaacgccaacag
gttatgcaacgtcgtcaacgtcgccaattgaatcagaaagtccgtattcaatctgcgaac
gatgagctgaatgctcaggaaagcactgcaccggttgccccagctagcgtacccgtcgct
gcttttgctacgcctgtcgtgcaggaagaagtgaaattactgccgcaagccactgctcag
gcagatgatgacgcgactaacgatcgtaatgccaacaatgaaaatggcatgccgcgtcgt
tctcgccgctcacctcgtcacttgcgtgtgagtggtcaacgtcgtcgtcgctatcgtgat
gaacgttacccgacgcaatctgctatgcctctggctggcgctttcgcctcaccagaaatg
gcgtcaggtaaagtttgggttcgttatccggtcgctcaaccgtttgaacaagctgccttt
gttgaaaacccggttgaagaacaattgttaaccgaggttgccgcagtggaagttgcggta
gttgaagcgcccgctgttgaagcagcttcagtcgaagtcgcggtaaatgttcccgcggcc
atcattgcagcgccagtggttgtcgcagcggtgactgaaactgttgctccggcatcagcg
tcacaacataaaccaggcggttcttcatcttcagttgccgccgttccaggccgtgcacct
gttgttgtgcctgaagttatcgccgaacccgttgctgaagaagtggtaacagaaactgaa
accatcgctgcgattgaagcgacccctgtcgtcgatgaagctatcgcgccagcagcagct
atcgaagatacaatcgtgcctgaaatccaagctgaagagactcttgttgctgagacggca
gttgaagaaaccgttatcgctgaagagcctgtcgttgttgaagagtcggttgaagtgctt
agagtgactgaaactgaagttatcgttgaagaaactgccgctgaagaagtgcatgtgact
gaagctgttgccgcggtacaacaacagccagatgtagcgcaccctgaaggtgtgttgttc
aagcactacgcttctgccccgatgaccaaggcaccggcacctgattacgcgccagagtcg
caaaccaaaggcaattgggaacgtccagcctttgattttgcaggtaaaggttctgcgggt
gggcatgctgccgccactcaggcaacggcccctgcgacaaaaccgcagtcagtcgaataa
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