Yersinia aldovae: AT01_2977
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Entry
AT01_2977 CDS
T03605
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yal
Yersinia aldovae
Pathway
yal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT01_2977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yal03019
]
AT01_2977
03009 Ribosome biogenesis [BR:
yal03009
]
AT01_2977
Enzymes [BR:
yal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT01_2977
Messenger RNA biogenesis [BR:
yal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AT01_2977
Ribosome biogenesis [BR:
yal03009
]
Prokaryotic type
rRNA helicases
AT01_2977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
DRTGG
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AJJ63471
LinkDB
All DBs
Position
3224684..3226666
Genome browser
AA seq
660 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIDPTLKAPQVLVLAPTRELAIQVAQALTDFSKHMSGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVR
FLESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ
NVERTMKLTIPEVQLPNAELLGERRLAKFAAKVGQQLESSDLDMYRALLAKLQPEDGFDI
ETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGSDRGRDRDRGDSRREPRADSRD
GGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHST
IELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGAGGERRGGPRTAGGE
RRDGAGAPPRRSFGGDRAPAGGGERRGNRDGQRAAAPRRDDAAAPAPAAAAPTRRRFGDA
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatctggggctatccgctcctattctttcc
gctctgactgatcttggttatgaaaaaccatctcctatccagttggaatgcatcccacac
ctgttgaatggccgtgatgttctcggtatggcacagacaggcagtggtaaaacagccgcg
tttggtctgccgctgttgcacaatattgacccaacattaaaagcgccacaggtgctggtg
ttggcaccgacccgtgagttggctattcaggttgcacaggcactgaccgacttctcaaaa
cacatgagcggcgttaacgtggtggccctgtacggtggccaacgttatgacgttcaatta
cgcgctttgcgccaggggccacaagttgttgttggtaccccaggtcgtctgttagaccac
ctgaaacgcggtactctgaatctgtccaacctgagcggtttggtgttggatgaagcagat
gaaatgctgcgcatgggctttatcgaagatgtcgaaaatattctggcacagatcccggct
gaacatcagaccgcgctgttctctgctaccatgccggaagcgattcgtcgtatcacccgt
cgctttatgaaagagccacaggaagtccgcattcagtctagcgtgacgacccgccctgac
atcagccagagtttctggcgcgtgggtggcggctataacaagaaagaagcattggttcgt
ttcctggaatctgaagatttcgatgcggctattatcttcgtgcgtactaaaaatgccacg
ctggaagttgcagaggccctggaacgtagcggctacaacagtgctgcattgaacggcgat
atgaatcaagcactgcgtgagcagacactggatcgtctgaaagatggccgtctggacatt
ctgattgcaactgatgttgctgcgcgtgggttggacgttgaacgtatcagcctggtagtg
aactatgatatccctatggattcagagtcttatgttcaccgtattggccgtaccggtcgt
gcgggtcgcgctggccgtgcgttactgttcgtcgagaaccgtgaacgtcgcctgttgcag
aacgttgaacgcaccatgaagctgacgattccagaagttcagttgccaaacgcagaattg
ctgggcgaacgccgtttagctaaatttgcggcaaaagtgggccaacagttagaaagcagt
gatttggatatgtaccgtgcattgctggctaagctgcaaccagaagacgggtttgatatt
gaaactctggctgctgcgctgctgaaaatggcacagggcgaacgtcctctgatcttgcca
cctgaagcaccgcgccgcccacagcgtgaattcaattctcgtgatgaccgtggtagcgat
cgtggtcgtgaccgtgaccgtggtgacagccgtcgtgagcctcgcgctgatagccgtgat
ggtggcgagcgcccagcacgccgcgaacgtcgtgatgttggtgagatggaactgtaccgc
attgaagtgggccgtgatgatggtgttgaagttcgtcatatcgttggcgctatcgctaac
gaaggtgatatcagcagccgttatattggtaacatcaagctgtttgcttcgcattcaact
attgagctgccaaaaggtatgccgggcgaaatgttatctcacttcacccgtacccgtatc
ctgaacaagccgctgaacatgcagttgttgggtgatgcacagccacatgaacgccgtgag
cgtccagctggcggtgccggtggtgagcgccgtggtggccctcgtaccgcaggtggtgaa
cgtcgtgatggcgcaggtgctcctcctcgtcgttcattcggcggcgaccgtgctcctgcc
ggtggtggcgaacgtcgtggcaaccgtgatggtcagcgcgctgctgcaccacgtcgtgat
gatgccgctgcgccagcgccagctgctgctgcaccaactcgccgtcgtttcggtgatgca
taa
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