Yersinia aldovae: AT01_3248
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Entry
AT01_3248 CDS
T03605
Symbol
pcnB
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
yal
Yersinia aldovae
Pathway
yal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT01_3248 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yal03019
]
AT01_3248 (pcnB)
Enzymes [BR:
yal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
AT01_3248 (pcnB)
Messenger RNA biogenesis [BR:
yal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AT01_3248 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
AJJ63342
LinkDB
All DBs
Position
complement(3566004..3567326)
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AA seq
440 aa
AA seq
DB search
MTIIPRDQHNISRRDISDNALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSAT
PEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQPAEDSDKNSSQQAQNGML
LRDNIFGTIEDDAQRRDFTINSLYYGISDFALRDYTGGLRDLKAGIIRLIGSPETRYRED
PVRMLRAVRFAAKLDMTLSPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLK
LCEYQLFQPLFPLIARHFTEEHDSPMERILEQVLKNTDHRLHNDQRVNPAFLFAAMLWYP
LIEHAQKLTQESGLAYYDAFALAMNDVLDEECRSLAIPKRITSLVRDIWLLQLRLSRRQG
KRAHKLMEHPKFRAAYDLLLLRSEVEKNHELQRLAQWWGEFQEATPLQQKNMLNTLGADP
APRRSRPRRPRKPAPRKEGA
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgacgattattccgcgagatcaacacaatatttctcgcagagatatcagcgataatgcg
ctgaaggttctttatcgcctgaataaatcgggctatgaagcctatctggtgggcggcggt
gtccgtgatctattgctgggcaagaaacctaaagattttgatatcaccaccagcgccact
ccagaacaggtacgaaagctgtttcgcaactgccgtctggtgggccgtcgtttccgtttg
gctcatgtgatgttcggcccggaaatcattgaagtcgcgactttccgtggtcaccatgaa
caacaacctgcggaagatagcgacaagaattcttctcagcaggcgcaaaatggtatgctg
ctgcgcgataatatcttcggtacgattgaagatgatgcccaacgccgcgatttcaccatt
aacagcctgtattacggtatttctgattttgcattgcgcgattacaccggcggtttgcgt
gatctgaaagcaggcattatccgtctaattggctctcctgaaacccgctaccgtgaagat
ccagtgcggatgctgcgtgctgttcgttttgccgcaaaacttgatatgactcttagccca
gaaactgccgagccgatcccacgtctggcctccttgctacgcgaaatcccgcccgcccgc
ctgtttgaagaatcgcttaaactgctgcaatcgggttatggctataaaacctatctgaaa
ctgtgtgaatatcagctatttcagcccctattcccactgattgcgcgtcacttcaccgaa
gagcatgactcgccgatggaacgcatcctggaacaggtgctgaaaaataccgaccaccgt
ttgcataatgatcaacgcgtcaatccagcattcttatttgccgctatgctttggtatcca
ttgatcgaacatgcgcagaaattgacgcaggaaagcggcctggcatattacgatgctttt
gcattggcaatgaatgatgtgctggatgaagagtgccgttcgttggcgattccaaagcgt
attacctcgctggtgcgggatatctggttactgcaactgcgcctgtcgcgtcgtcagggc
aaacgggcacataaactgatggagcatccaaagttccgtgccgcttatgacctactgttg
ctgcgttccgaagtggaaaaaaaccatgagttgcagcgcctggcacagtggtggggagaa
ttccaggaagctacgccactgcaacagaaaaacatgctaaatacattaggtgcggatccg
gcaccacggcgttcacgtcctcgccgcccacggaaaccggcaccacgtaaagaaggggca
taa
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