Yersinia aldovae: AT01_360
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Entry
AT01_360 CDS
T03605
Symbol
hrpA
Name
(GenBank) RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
yal
Yersinia aldovae
Brite
KEGG Orthology (KO) [BR:
yal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yal03019
]
AT01_360 (hrpA)
Enzymes [BR:
yal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AT01_360 (hrpA)
Messenger RNA biogenesis [BR:
yal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AT01_360 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
AAA_22
HA2_C
HA2_N
AAA_19
NACHT
nSTAND3
PhoH
T2SSE
ResIII
AAA_25
NTPase_1
Ubiquitin_3
Motif
Other DBs
NCBI-ProteinID:
AJJ62644
LinkDB
All DBs
Position
364700..368587
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSSLAALSTQLGELMLRDQQRMRRRLQGARKINDPDAVAAFTREIETELGVAMQRVNSR
RAACPAITYPANLPVSQKKPDIYNAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVKGV
IGHTQPRRLAARTVANRIAEELDTTLGGCVGYKVRFNDQVGENTLVKLMTDGILLAEIQQ
DRLLLQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVEVRYRPVVDDADDVERDQLQAIFDAVDELGRESPGDILIFMSGEREIR
DTADALMKQNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDGICIRLYAEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTASNGHQQ
LTPLGRQLAQLPVDPRLARMVLEAQRSGSVRELMIITSALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAFVNLWDYLKEQQKALSSAQFRKLCRSDFLNYLRVREWQDIYTQLRQVV
KELGIPVNSVVADYRSVHSAILTGLLSHVGQKDVEKQEFTGARNARFAVFPGSGLFKKPP
KWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKHHYSDPHWEKAQGAVMACEKVTLF
GLPIVAERKINYGPIDPPLCRELFIRHGLVEGDWQTRHAFFRANLKLLAEVEELEHKSRR
RDILVDDETLFNFYDQRIGRDVISARHFDSWWKKTSQTQPELLNFEKTMLIKDGANKVNP
LDYPNFWYQGSIKLRLSYQFEPGTDADGVTVHIPLQILNQIQEQGFDWQIPGIRRELIIA
LIKSLPKPVRRNFVPAPNYAEAFLARVTPLETGLLDALERELRRMTGVTVSRETWQWDQV
PDHLKMTFRVLDDKNRTLREGKDLAALKLQLQEKVQETLSAVADDGIEQNDLHIWSFGDL
PVCYEQRRGGYEVKAYPALVDEKDSVAIRLFDSESQQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKSKLGLYFNTYGKVMDLIDDCIACGVDKLVAQYGGPVWQEADFARLQEKVRAEL
NDTVVDIAQQVEQILTMVFSINKRLKGRVDISQALALSDIKAQLGGLIYRGFVTNNGWKR
LPDTLRYLRAIERRLEKLAVDPHRDRAQMVRVEHIQKMWQQWLTKLPPKRQQDEEVKEVR
WMIEELRVSLFAQQLGTPYPISDKRILQTIEQLSI
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcttcgctcgcagcgttatccacccaacttggtgagttgatgctccgtgaccaa
cagcgtatgcggcgtcggctgcaaggcgcacgaaaaatcaatgatcccgacgccgtggcg
gcctttacccgcgaaatcgaaacagagcttggcgttgccatgcagcgggtcaatagccgt
cgtgccgcttgccctgcaattacctatcctgcgaatttgccggttagccagaagaaaccg
gatatctataacgccatccgcgaccatcaggtggtgattgttgccggtgaaaccggctcc
ggtaaaacgacgcagataccgaaaatctgcctggagctgggccgtggcgtgaaaggggtg
atcggccatacccaaccacggcgtctggcggcacgcaccgtcgcaaaccgcattgccgaa
gagttggacacgacgctcggcggttgtgtcggttataaagtccgttttaatgatcaggtt
ggcgagaacacgctggtcaaattaatgaccgacggcattttactggcggagattcagcaa
gaccgtctgctgctgcaatatgacaccttgatcattgatgaggctcatgaacgtagcctg
aatattgatttcattctgggttatctgcgggagttattacccaaacggccagacttgaaa
gtcattattacctctgcaaccatcgatccacagcgtttctcacgtcatttcaataatgcg
ccgatcattgaggtttctggccgcacctatccggtggaggtgcgttaccgtccagtcgtt
gatgacgccgatgatgttgagcgcgatcagctacaagctatttttgatgcggtagatgaa
ctggggcgggaaagccccggtgacattttgatctttatgagcggcgagcgtgaaattcgc
gataccgccgatgcgctgatgaagcaaaatctgccacataccgaagtgttgccgctgtat
gcccgtttatcaaatagtgagcagaatcgggtatttcagtctcatcatgggcggcgcatt
gtgctggcgaccaacgtggctgaaacgtcgctaacggtgccggggatcaaatatgtgatt
gatcccggcacggcgcgtatcagccgttatagcttccgcaccaaggtgcaacgcttaccg
attgaaccggtatcccaggcgtcggctaatcagcgcaaagggcgctgtggccgtgtctcc
gatggtatttgtatccgcctctacgcagagcaggatttcctctctcgccctgaatttacc
gatcccgagattctgcgtaccaatctggcgtcagttattctgcaaatgacctcactcggt
ttgggtgatattgcggcattcccgtttgttgaagcgccagataagcgtaatatccaggat
ggcgtgcgcctgctggaagagctgggggcgatacaaactgccagtaatggccatcaacaa
ctgacgccgttaggacggcagttggcacagttaccggttgatccacggttggcgcgtatg
gtgttggaagcacagcgaagcggcagtgtccgtgagctgatgatcattacttctgcgctc
tcgattcaagatcctcgcgaacgaccaatggataagcagcaggcatccgatgaaaaacat
cgccgttttgctgataaagactcggatttcctcgcttttgttaacttatgggattatctg
aaagagcagcaaaaagcgttgtcttcggcgcagtttcgcaagttgtgtcgcagtgatttc
cttaactatctgcgggtgcgcgaatggcaggatatctacacgcaactgcgtcaggtggtg
aaagagctggggataccggttaacagtgtcgtggcggattatcgcagtgtccatagcgcg
atattgaccggtctgctctcgcatgtcggccagaaagatgttgaaaagcaagagtttacc
ggcgcacgtaatgcccgctttgcagtttttccagggtctgggttattcaaaaaaccgcct
aaatgggtgatggtggcggaactggttgagactagccgcctgtgggggcgcattgcggcg
cgcattgaaccggaatggatcgaacccctggcgcagcatttggtgaaacaccattacagt
gatccacattgggaaaaagcgcagggtgcggtcatggcctgcgaaaaagtgaccttattt
ggcttaccgattgtggcggagcgtaagatcaattatggcccgattgatccgccgctgtgt
cgcgaactgtttatccggcatggcttagtggaaggggattggcagacgcgtcatgccttc
ttccgtgccaatctcaagttattggcagaagtcgaagagctggaacataaatcacgtcgg
cgtgacattctggttgatgatgaaacactgtttaacttttacgatcagcgcattggccgt
gacgtaatttctgcccgtcattttgatagctggtggaagaaaaccagccagacacagcca
gaattgcttaactttgagaaaaccatgcttatcaaggatggtgcgaacaaagttaaccca
ttggattaccccaatttttggtatcaaggttcaatcaaactgcgcttatcctatcaattt
gaaccaggcacggatgccgatggtgtcacggtccatataccgttacaaatcctcaaccaa
attcaagagcagggttttgactggcaaattccaggtatccgccgtgaactgataatcgca
ctgatcaaatctctgccaaaaccagtgcggcgtaattttgtgcctgcgcccaactatgct
gaagcatttttagcgcgagtaacaccgttggaaactggcctgctggatgcgctggagcgc
gaactgcggcgcatgactggcgtgacagtgtcacgagaaacgtggcagtgggatcaagtg
cctgaccatcttaaaatgacgttccgggtactggatgataaaaatcgcaccttacgagaa
ggcaaagatcttgctgcactgaagttacaattgcaggaaaaagtacaagaaaccctttct
gcagttgccgatgatggtattgaacaaaatgatctgcacatttggagctttggtgacttg
ccggtgtgctatgagcaacgccgtggcggttacgaagttaaagcctatcccgcattggtg
gatgagaaagacagtgtggcgatccgcctgttcgatagcgaatcccagcagcagcaagcg
atgtggcaggggacgcgccgtttattactgctaaatattccttcgcctatcaagtatttg
cacgaaaaactgccgaacaaatccaagctggggctgtattttaatacctatggcaaagta
atggatttaattgatgattgtatcgcctgtggtgtggataaactggttgcgcaatatggt
ggcccggtttggcaggaggcggattttgcgcgtctacaggagaaagttcgcgccgaactg
aatgatacggtggtcgatatcgcgcaacaggttgagcagatcctgacgatggtatttagt
atcaacaaacgtttaaaagggcgggttgatatttctcaggctctggcactgtcggatatc
aaagcacagcttggtggtttgatttatcgtggttttgtgaccaataacggctggaaacgt
ctgcccgatacgctgcggtatttgcgcgccatagagcgccgactggagaaactggcggtg
gaccctcatcgtgaccgcgcccaaatggtgcgggtagaacacattcagaaaatgtggcag
caatggctcaccaagttgccacccaaacgccagcaggatgaagaggtaaaagaagtgcgc
tggatgattgaggagctgcgcgtcagcctgtttgcccaacaactcgggacgccttatcca
atatcggataagcgtattttacaaacgattgagcaactctccatctaa
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