Yersinia aldovae: AT01_489
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Entry
AT01_489 CDS
T03605
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
yal
Yersinia aldovae
Brite
KEGG Orthology (KO) [BR:
yal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yal03032
]
AT01_489 (topA)
03400 DNA repair and recombination proteins [BR:
yal03400
]
AT01_489 (topA)
Enzymes [BR:
yal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AT01_489 (topA)
DNA replication proteins [BR:
yal03032
]
Prokaryotic type
DNA Topoisomerases
AT01_489 (topA)
DNA repair and recombination proteins [BR:
yal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AT01_489 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AJJ63665
LinkDB
All DBs
Position
complement(523560..526187)
Genome browser
AA seq
875 aa
AA seq
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MGKALVIVESPAKAKTINKYLGNDFVVKSSVGHIRDLPTSGSASKKSADSTEDKAKKAEK
PKVKVKKDEKVALVNRMGVDPYHGWKAQYEILPGKEKVVAELKALAENADHIYLATDLDR
EGEAIAWHLREVIGGDDKRFSRVVFNEITKNAIQQAFNQPGELNINRVNAQQARRFMDRV
VGYMVSPLLWKKIARGLSAGRVQSVAVRLVVDRERDIKAFVPEEYWELHADLLAKGDVPI
QMEVTHAHNKPFKPVNREQTHAALKLLENARYNVLDREDKPTSSKPGAPFITSTLQQAAS
TRLSFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALTMVRGYIGDNFGDKYLPSAPNQ
YSSKENSQEAHEAIRPSDVSVLAEQLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLT
VQAGDFQLRAKGRTLRFDGWTKVMPALRKGDEDRTLPVIDVGTDLDLQKLIPSQHFTKPP
ARYSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENF
RELMNYDFTARMESGLDQVANNQAEWKTVLDGFFAEFSEQLEKAEKDPEEGGMRPNQMVM
TSIDCPTCGRQMGIRTASTGVFLGCSGYALPPKERCKTTINLVPDAEILNILEGDDAETN
ALRARRRCEKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEQGEFRIKGYEGPIVECEKC
GSEMHLKMGRFGKYMGCTNDECKNTRKILRSGEVAPPKEDPVPLPELPCDKSDAYFVLRD
GAAGVFLAANTFPKSRETRAPMVEELVRFKDRLPEKLRYLADAPVVDNDGNKTMVRFSRK
TKQQYVSSEKEGKATGWSAFYIDGKWVEAKKETKK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataaatac
ttagggaatgactttgtggttaagtccagtgtcggtcacattcgtgatttgccgaccagt
ggctcagccagtaaaaagagcgctgactcaactgaagataaagccaagaaagccgagaag
cccaaagtaaaagtgaagaaagacgaaaaggttgctttagtgaaccgtatgggcgtcgat
ccttatcatggctggaaagcgcaatatgaaattttgcccggtaaagagaaagtggttgcc
gagctgaaagcattagccgaaaacgctgaccacatctatctcgcaaccgaccttgaccgc
gaaggagaggctatcgcctggcatttgcgggaagtgattggtggtgacgataagcgtttt
agtcgagtggtgtttaacgaaatcacgaaaaatgctatccaacaggcatttaatcaaccg
ggtgaattgaacattaatcgggttaacgcccagcaagcccgtcgctttatggaccgggtt
gtggggtatatggtttctccgctgctgtggaaaaagattgcccgaggcttgtctgccggg
cgcgttcagtcagtggctgtgcgtttggtcgtcgatcgtgaacgagatattaaagcgttt
gtcccagaagagtactgggagttacatgctgacctgctggcaaaaggcgacgttccgata
caaatggaagttacccatgcgcacaataagccgtttaaaccggttaaccgtgagcagacc
catgccgcactgaaattattggaaaacgcccgctataacgtgctggatcgtgaagacaaa
ccgaccagcagtaagccgggtgcgccgtttatcacctctaccttgcagcaggcggccagt
actcgcctgagctttggggtgaagaaaaccatgatgatggcgcagcgcttgtatgaagcg
ggtcatatcacctatatgcgtaccgattccaccaatttaagtcaggatgcactgacgatg
gtgcgcggttatatcggtgataactttggtgacaaatacctgccatccgcgccgaatcag
tacagtagcaaagagaattctcaggaagcccatgaagctatccgtccgtcggatgtgagt
gtgctggcggagcagttaaaagatatggaagccgatgcccagaagctgtatcagcttatt
tggcgtcagttcgtcgcgtgtcagatgacaccggccaagtacgattccaccacgttgaca
gtgcaagccggtgatttccaactgcgtgccaaaggccgtactttgcgctttgatggttgg
accaaagtgatgccagcactgcgcaaaggcgatgaagatcgcaccttgccagtgattgac
gttggcactgatctggatttacaaaaactgatccccagccagcactttaccaagccgcct
gcacgttacagtgaagcatcgctggtaaaagagttggaaaaacgcggtattggccgtccg
tctacttatgcgtcgatcatttcgacgatacaagatcgtggctatgtccgggttgagaac
cgccgtttctatgctgaaaaaatgggtgaaattgtaaccgaccgtctggaagagaacttc
cgcgagttgatgaactacgatttcaccgcacgtatggaaagtggcctggatcaggttgcc
aataatcaggctgaatggaaaacggtactggatggcttcttcgctgagttcagtgagcag
cttgaaaaggcagagaaagatcctgaagagggcgggatgcgcccgaatcagatggtcatg
accagtatagattgcccaacttgtggtcgtcagatggggatacgcacggccagtaccggg
gtgttcctgggatgttccggttatgcgctgcccccgaaagagcgctgcaaaaccaccatc
aatctggtgccagacgctgagattctaaatattctggaaggcgatgatgcggaaaccaac
gccttgcgcgcccgccgtcgttgcgagaagtgcggcactgcgatggacagttatctgatt
gataatcagcgtaaattgcatgtctgtggtaataatccggcctgtgatggttatgaaatc
gagcagggcgagttccgaattaaagggtatgaaggcccgattgttgagtgcgagaaatgt
ggttctgaaatgcacctgaaaatggggcgctttggtaagtacatgggctgtaccaacgac
gaatgtaagaatacccgtaaaatcttgcgcagcggcgaagttgcaccgccgaaagaagac
ccggttccgttgccagaattgccttgtgataaatcagatgcctatttcgtgctacgtgat
ggggctgcgggcgtgttcctggccgctaacaccttccctaaatcgcgtgaaacccgcgcg
ccaatggttgaggaattggttagattcaaagatcgtttgcctgagaagttacgctacctg
gctgatgcgccagtggtagacaatgacggcaataaaacgatggttcgctttagccgcaag
actaaacagcagtatgtttcatcagagaaagagggtaaggccacaggatggtctgcattc
tatatcgatggaaaatgggttgaagcaaaaaaagaaacgaagaaataa
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