Salipiger sp. CCB-MM3: AYJ57_01795
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Entry
AYJ57_01795 CDS
T04443
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
yan
Salipiger sp. CCB-MM3
Pathway
yan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ57_01795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yan03019
]
AYJ57_01795
03009 Ribosome biogenesis [BR:
yan03009
]
AYJ57_01795
Enzymes [BR:
yan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AYJ57_01795
Messenger RNA biogenesis [BR:
yan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYJ57_01795
Ribosome biogenesis [BR:
yan03009
]
Prokaryotic type
rRNA processing factors
AYJ57_01795
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ANT59201
LinkDB
All DBs
Position
1:complement(364113..366983)
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AA seq
956 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEEAALAAEDDDDDKEKSRSKSSRSRTRRS
RSRSKAEKASTDDKTVTSEVSEVSTGISGMETIDLGDDTVEPGEGEGLSPMETVAETPVE
EPNDGPNDSTEADTAAAEAEVVGTPETDAGAPETEAKAPVEDDDEDHDDDHVGSSKADDS
IESVADDDTEEDIRPARKPRPRKYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAG
RYCVLMPNTARGGGISRKITNAADRSKLKEIAQTIDVPKGAGLIIRTAGAKRTKTEIKRD
YEYLQRLWEQIRELTLKSVAPAKIYEEGDLIKRSIRDLYNREIDEVHVEGERGYRIAKDF
MKMIMPSHAKNVKHYLDPMPLFARYQVESYLAGMFNPTVQLKSGGYIVIGVTEALVAIDV
NSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKKLK
DKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCAACHGTGLIRSDDNMALNIL
RQVEEEGVRRRSREVLVKCPVGIANYLMNQKREHVAQIEARYGMAVRIEGDLHLVSPDFT
MEKFKTATRNVPEVVAPVVSANASLMDQVDEDVAAEEDEDEDQLETQAEDQAEDNSSSDG
NGENGNGSEDGDGKPKKRRRRRRRSRSKNKDAQNGENGEGNGEGNDATPTEVSEAAAAET
VTGTAEAATEVAPAEAGSTEASSEASTEAPAAEEAPAEKPKRTRRSRSRKKAEPEATEAP
TEAPAAEAPAEAAVEAAAAPAPEAAAEEAAPAVSEEPVVTEVEAAPEPVSEAPVAEAPVE
PQAEAAPEAPAEEVPVAETPAEPEPQPEPAPEPEPVSAEPVQEEAPKPKRRGWWSR
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctcatcgatgccacccacgcggaagagacccgcgttgtggtggtc
gacggaaacaaggtcgaggaattcgactttgaatcggaaaacaagcgccaactagcaggc
aatatctatctcgcgaaagtcacgcgggtcgagccgtcgcttcaggccgctttcgtggac
tacggcggcaaccgccacgggttcctcgcgttttccgagatccaccccgattattaccag
atccccgtcgccgaccgtcaggcgctgatggaggaagaggctgcactcgccgccgaggac
gatgacgacgacaaggaaaagtcgcgctcgaaatcctcgcgctcgcgcacccgtcgttcg
cgctcgcgcagcaaggccgagaaggccagcaccgacgacaagacggtgaccagcgaagtg
tccgaagtgtcgaccggcatatcgggtatggagaccattgacctcggcgacgacaccgtc
gagccgggcgagggcgaaggcctgtcgccgatggagaccgtggccgagaccccggtcgaa
gagcccaacgatggccccaacgacagcactgaagcggacaccgccgcggcagaggccgag
gtggtgggcaccccggagacggatgcaggcgcgcccgagaccgaagccaaggcgccggtc
gaagacgacgacgaggatcatgacgacgatcacgttggctcttcgaaagccgatgacagc
atcgagtcggtcgctgacgacgacaccgaggaagacatccgcccggcgcgcaagccgcgt
ccgcgcaagtacaagatccaagaagtcatcaaagtccgccagatccttctggtgcaggtc
gtcaaggaggagcgcggcaacaagggcgcggcgctcaccacctatctgtcgcttgcgggc
cgctattgcgttctgatgccgaataccgcccgtggcggcggcatctcgcgcaagatcacc
aatgccgccgaccgctcgaagctcaaggagatcgcgcagaccatcgacgtgcccaagggc
gccggtctgatcatccgcaccgcgggtgccaagcgcaccaagaccgagatcaagcgcgac
tatgaatacctgcagcgcctctgggagcagatccgcgaactgacgctgaagtcggttgcc
ccggcgaagatttacgaagagggcgacctcatcaagcgctcgatccgcgacctctacaac
cgcgagatcgacgaagttcacgtggaaggcgagcgcggctaccgcatcgccaaggacttc
atgaagatgatcatgccgtcccacgcgaagaacgtgaaacactacctcgacccgatgccg
ctcttcgcgcgctatcaggtcgaaagctacctcgcgggcatgttcaacccgacggtccag
ctgaaatccggcggctacatcgtgatcggtgtgaccgaggcgctggtggcgatcgacgtg
aactcgggccgggccaccaaggaaggatcgatcgaagagacggcgctcaagaccaaccta
gaggccgccgaagaagtggcgcgtcagctgcgtctgcgcgacctcgcgggtctgatcgtc
atcgacttcatcgacatggaagagcgcaagaacaacgccgccgtcgagaagaagctgaaa
gacaagctcaagaccgatcgtgcgcgcattcaggttggccgcatctcgggcttcggcctg
ctggagatgtcgcgccagcgtctgcgcccgggcatgatcgaggccaccacgcagccctgc
gcggcctgccacggcaccggccttatccgctcggatgacaatatggcgctgaacatcctg
cgtcaggtcgaggaagagggcgtgcgccgccgctcgcgtgaggtgctggtgaaatgcccg
gtgggcatcgccaactacctgatgaaccagaagcgcgagcatgtggcccagatcgaggcg
cgctacggcatggccgtgcgcatcgagggcgatctgcacctcgtcagccccgacttcacc
atggagaagttcaagaccgccacccgcaacgtgcccgaagtggtcgcgccggtggtctcg
gccaacgcctcgctgatggatcaggtcgacgaagacgtggccgccgaagaagacgaggac
gaggatcagctcgaaactcaggctgaagatcaggctgaagacaactcttccagtgacggc
aacggcgagaacggcaacggatccgaagacggtgacggcaagccgaagaagcgccgccgc
cgccgccgccgctcgcgttcgaagaacaaggacgcgcagaacggcgagaatggtgagggc
aacggcgagggcaatgacgccactccgaccgaagtctccgaagctgccgctgctgaaacg
gtgaccggaacggcggaagctgcgaccgaggtggcgccggcagaggcaggctccaccgag
gcctccagcgaggcttccactgaggcgcctgctgccgaagaggcgcccgccgagaagccc
aagcgcacccgccgctcgcgcagccgcaagaaggccgagcccgaagcgacggaggcaccg
actgaggcaccggcagccgaggcaccggcggaagctgctgttgaagctgctgccgcgcct
gcgcccgaagccgctgcggaagaggcggcacctgcggtgagcgaagagccggtggtgacc
gaggtcgaagcggcgcccgagccggtaagcgaggcgcccgtcgccgaagctccggtcgag
ccgcaggccgaggctgcgcctgaagcacccgccgaagaggtgccggttgcggaaacgccc
gctgagcccgagcctcagcctgagcccgcgccggaacccgagcctgtctcggcagagccg
gttcaggaagaggctccgaagcccaagcgtcgcggatggtggagccgctga
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