Salipiger sp. CCB-MM3: AYJ57_07710
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Entry
AYJ57_07710 CDS
T04443
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
yan
Salipiger sp. CCB-MM3
Pathway
yan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ57_07710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yan03021
]
AYJ57_07710
03019 Messenger RNA biogenesis [BR:
yan03019
]
AYJ57_07710
Transcription machinery [BR:
yan03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AYJ57_07710
Messenger RNA biogenesis [BR:
yan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AYJ57_07710
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
S1CSD-TOTE-2
OB_RNB
NACHT
AAA_25
ATPase_2
AAA
Motif
Other DBs
NCBI-ProteinID:
ANT60259
LinkDB
All DBs
Position
1:complement(1595999..1597282)
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AA seq
427 aa
AA seq
DB search
MTSAESTERLNLSDLKAQSPKDLLAMAEELDIENASTMRKGEMMFQILRERADEGWTIFG
DGVLEVLQDGFGFLRSPEANYLPGPDDIYVSPEMIRKYSLRTGDTIEGEIRAPDNEERYF
ALVDVSAINFEDPERARHKIAFDNLTPLYPDERLKMEIEDPTIKDKSARIIDLVAPIGKG
QRSLIVAPPRTGKTVLLQNIATSIEKNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSST
FDEPATRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDA
NALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVAD
KRVFPAIDILKSGTRKEDLLTDKVDLQKTFVLRRILNPMGTTDAIEFLLSKLKQTKTNGE
FFDSMNS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtgccgaaagcactgaacggctgaacctgtccgatctgaaggcgcaaagcccg
aaagatctcctcgccatggccgaagagctcgacatcgagaacgcctcgaccatgcgtaaa
ggcgagatgatgttccaaattctccgcgagcgtgcggatgagggttggaccatcttcggc
gacggcgttcttgaggtgctgcaggacggctttggcttccttcgctcgcccgaggcaaac
tatctgccgggtcccgatgacatctatgtctcgcccgagatgatccggaagtattcgctg
cgcaccggcgacaccatcgaaggcgagatccgagcacccgacaatgaagagcgctacttc
gcgctggtcgacgtctctgcgatcaacttcgaagacccggaacgcgcccgtcacaagatc
gccttcgacaacctgacaccgctctatcctgacgagcgtctgaagatggaaatcgaagac
ccgacgatcaaggacaaatcggcccgcatcatcgatctggtcgcgccgatcggtaagggc
cagcgttcgctcatcgtggcaccgccgcggaccggtaagacggttctgctgcagaacatc
gccacctcgatcgagaagaaccaccccgagtgctatctgatcgtcctgctgatcgacgaa
cgtccggaagaagtgaccgacatgcagcgttcggtgaagggtgaggttgtctcctcgacc
ttcgacgagcctgccacgcgccacgttgccgtctcggaaatggtcatcgaaaaggccaag
cgccttgtggagcacaaacgagatgttgtgatccttcttgactcgatcacaagacttggt
agggcgttcaacaccgtcgtgccgtcgtcgggtaaggtcctgaccggtggtgtcgatgcc
aacgcgctgcagcgtccgaagcgcttcttcggtgccgcgcggaacatcgaagagggtggc
tcgctcaccatcatcgccaccgcgctgatcgacaccggctcgcgtatggacgaggtgatc
ttcgaagaattcaaaggcaccggcaactccgagatcgttctcgaccgcaaggttgccgac
aagcgcgtcttcccggcgatcgacattctcaagtcgggcacccggaaagaggacctgctc
accgacaaggtcgacctgcaaaagaccttcgtgctgcgccgtatcctcaacccgatgggc
acgacggacgcgatcgagttcttgctctccaagctcaagcagacgaagacgaacggcgaa
ttcttcgactccatgaacagttaa
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